VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms.

by Jim P Fouracre, Jia He, Victoria J Chen, Simone Sidoli, R Scott Poethig
Published 2021-06-01

Toxoplasma gondii PPM3C, a secreted protein phosphatase, affects parasitophorous vacuole effector export.

by Joshua Mayoral, Tadakimi Tomita, Vincent Tu, Jennifer T Aguilan, Simone Sidoli, Louis M Weiss
Published 2020-12-01

Mass Spectrometry to Study Chromatin Compaction

by Stephanie Stransky, Jennifer Aguilan, Jake Lachowicz, Carlos Madrid-Aliste, Edward Nieves, Simone Sidoli
Published 2020-06-01

Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition

by Congcong Lu, Simone Sidoli, Katarzyna Kulej, Karen Ross, Cathy H. Wu, Benjamin A. Garcia
Published 2019-02-01

The C. elegans H3K27 demethylase UTX-1 is essential for normal development, independent of its enzymatic activity.

by Julien Vandamme, Gaëlle Lettier, Simone Sidoli, Elia Di Schiavi, Ole Nørregaard Jensen, Anna Elisabetta Salcini
Published 2012-01-01

Optimization of calmodulin-affinity chromatography for brain and organelles

by Katarzyna Kulej, Simone Sidoli, Giuseppe Palmisano, Alistair V.G. Edwards, Phillip J. Robinson, Martin R. Larsen
Published 2015-09-01

Metabolic labeling in middle-down proteomics allows for investigation of the dynamics of the histone code

by Simone Sidoli, Congcong Lu, Mariel Coradin, Xiaoshi Wang, Kelly R. Karch, Chrystian Ruminowicz, Benjamin A. Garcia
Published 2017-07-01

Quantitative chromatin proteomics reveals a dynamic histone post-translational modification landscape that defines asexual and sexual Plasmodium falciparum parasites

by Nanika Coetzee, Simone Sidoli, Riëtte van Biljon, Heather Painter, Manuel Llinás, Benjamin A. Garcia, Lyn-Marie Birkholtz
Published 2017-04-01

Caenorhabditis elegans nuclear RNAi factor SET-32 deposits the transgenerational histone modification, H3K23me3

by Lianna Schwartz-Orbach, Chenzhen Zhang, Simone Sidoli, Richa Amin, Diljeet Kaur, Anna Zhebrun, Julie Ni, Sam G Gu
Published 2020-08-01

Phosphoproteomic Analysis of Rat Neutrophils Shows the Effect of Intestinal Ischemia/Reperfusion and Preconditioning on Kinases and Phosphatases

by Muhammad Tahir, Samina Arshid, Belchor Fontes, Mariana S. Castro, Simone Sidoli, Veit Schwämmle, Isabelle S. Luz, Peter Roepstorff, Wagner Fontes
Published 2020-08-01

An HDAC3-PROX1 corepressor module acts on HNF4α to control hepatic triglycerides

by Sean M. Armour, Jarrett R. Remsberg, Manashree Damle, Simone Sidoli, Wesley Y. Ho, Zhenghui Li, Benjamin A. Garcia, Mitchell A. Lazar
Published 2017-09-01

Transcription Factor Cooperativity in Early Adipogenic Hotspots and Super-Enhancers

by Rasmus Siersbæk, Atefeh Rabiee, Ronni Nielsen, Simone Sidoli, Sofie Traynor, Anne Loft, Lars La Cour Poulsen, Adelina Rogowska-Wrzesinska, Ole N. Jensen, Susanne Mandrup
Published 2014-06-01

Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function

by Wenqing Ren, Nicole Medeiros, Robert Warneford-Thomson, Phillip Wulfridge, Qingqing Yan, Joyce Bian, Simone Sidoli, Benjamin A. Garcia, Emmanuel Skordalakes, Eric Joyce, Roberto Bonasio, Kavitha Sarma
Published 2020-05-01

A Key Silencing Histone Mark on Chromatin Is Lost When Colorectal Adenocarcinoma Cells Are Depleted of Methionine by Methionine γ-Lyase

by Samanta Raboni, Samanta Raboni, Serena Montalbano, Stephanie Stransky, Benjamin A. Garcia, Annamaria Buschini, Annamaria Buschini, Stefano Bettati, Stefano Bettati, Stefano Bettati, Simone Sidoli, Andrea Mozzarelli, Andrea Mozzarelli
Published 2021-10-01

Analysis of the Effect of Intestinal Ischemia and Reperfusion on the Rat Neutrophils Proteome

by Muhammad Tahir, Muhammad Tahir, Samina Arshid, Samina Arshid, Samina Arshid, Belchor Fontes, Mariana S. Castro, Isabelle S. Luz, Katyelle L. R. Botelho, Simone Sidoli, Veit Schwämmle, Peter Roepstorff, Wagner Fontes
Published 2018-11-01

One-shot analysis of translated mammalian lncRNAs with AHARIBO

by Luca Minati, Claudia Firrito, Alessia Del Piano, Alberto Peretti, Simone Sidoli, Daniele Peroni, Romina Belli, Francesco Gandolfi, Alessandro Romanel, Paola Bernabo, Jacopo Zasso, Alessandro Quattrone, Graziano Guella, Fabio Lauria, Gabriella Viero, Massimiliano Clamer
Published 2021-02-01

Interrogating Histone Acetylation and BRD4 as Mitotic Bookmarks of Transcription

by Vivek Behera, Aaron J. Stonestrom, Nicole Hamagami, Chris C. Hsiung, Cheryl A. Keller, Belinda Giardine, Simone Sidoli, Zuo-Fei Yuan, Natarajan V. Bhanu, Michael T. Werner, Hongxin Wang, Benjamin A. Garcia, Ross C. Hardison, Gerd A. Blobel
Published 2019-04-01

Characterization of histone acylations links chromatin modifications with metabolism

by Johayra Simithy, Simone Sidoli, Zuo-Fei Yuan, Mariel Coradin, Natarajan V. Bhanu, Dylan M. Marchione, Brianna J. Klein, Gleb A. Bazilevsky, Cheryl E. McCullough, Robert S. Magin, Tatiana G. Kutateladze, Nathaniel W. Snyder, Ronen Marmorstein, Benjamin A. Garcia
Published 2017-10-01

White adipose remodeling during browning in mice involves YBX1 to drive thermogenic commitment

by Atefeh Rabiee, Kaja Plucińska, Marie Sophie Isidor, Erin Louise Brown, Marco Tozzi, Simone Sidoli, Patricia Stephanie S. Petersen, Marina Agueda-Oyarzabal, Silje Bøen Torsetnes, Galal Nazih Chehabi, Morten Lundh, Ali Altıntaş, Romain Barrès, Ole Nørregaard Jensen, Zachary Gerhart-Hines, Brice Emanuelli
Published 2021-02-01

Roles of H3K27me2 and H3K27me3 Examined during Fate Specification of Embryonic Stem Cells

by Aster H. Juan, Stan Wang, Kyung Dae Ko, Hossein Zare, Pei-Fang Tsai, Xuesong Feng, Karinna O. Vivanco, Anthony M. Ascoli, Gustavo Gutierrez-Cruz, Jordan Krebs, Simone Sidoli, Adam L. Knight, Roger A. Pedersen, Benjamin A. Garcia, Rafael Casellas, Jizhong Zou, Vittorio Sartorelli
Published 2016-10-01