Gō model revisited

by Shoji Takada
Published 2019-11-01

Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations.

by Hiroo Kenzaki, Shoji Takada
Published 2015-08-01

Bayesian parameter inference by Markov chain Monte Carlo with hybrid fitness measures: theory and test in apoptosis signal transduction network.

by Yohei Murakami, Shoji Takada
Published 2013-01-01

Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA.

by Giovanni B Brandani, Shoji Takada
Published 2018-11-01

Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure.

by Toru Niina, Yasuhiro Matsunaga, Shoji Takada
Published 2021-07-01

Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations.

by Shintaroh Kubo, Wenfei Li, Shoji Takada
Published 2017-09-01

How Co-translational Folding of Multi-domain Protein Is Affected by Elongation Schedule: Molecular Simulations.

by Tomohiro Tanaka, Naoto Hori, Shoji Takada
Published 2015-07-01

Case Report: Bayesian Statistical Inference of Experimental Parameters via Biomolecular Simulations: Atomic Force Microscopy

by Sotaro Fuchigami, Toru Niina, Shoji Takada
Published 2021-03-01

The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study.

by Giovanni B Brandani, Cheng Tan, Shoji Takada
Published 2021-07-01

The structural basis of a high affinity ATP binding ε subunit from a bacterial ATP synthase.

by Alexander Krah, Yasuyuki Kato-Yamada, Shoji Takada
Published 2017-01-01

Structure-based molecular simulations reveal the enhancement of biased Brownian motions in single-headed kinesin.

by Ryo Kanada, Takeshi Kuwata, Hiroo Kenzaki, Shoji Takada
Published 2013-01-01

Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations.

by Toru Niina, Giovanni B Brandani, Cheng Tan, Shoji Takada
Published 2017-12-01

Modeling of DNA binding to the condensin hinge domain using molecular dynamics simulations guided by atomic force microscopy.

by Hiroki Koide, Noriyuki Kodera, Shveta Bisht, Shoji Takada, Tsuyoshi Terakawa
Published 2021-07-01