Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation

by Shany Ofaim, Shany Ofaim, Maya Ofek-Lalzar, Noa Sela, Jiandong Jinag, Yechezkel Kashi, Dror Minz, Shiri Freilich
Published 2017-08-01

NetMet: A Network-Based Tool for Predicting Metabolic Capacities of Microbial Species and their Interactions

by Ofir Tal, Gopinath Selvaraj, Shlomit Medina, Shany Ofaim, Shiri Freilich
Published 2020-06-01

Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus

by Shany Ofaim, Shany Ofaim, Snorre Sulheim, Snorre Sulheim, Snorre Sulheim, Eivind Almaas, Eivind Almaas, Daniel Sher, Daniel Segrè, Daniel Segrè, Daniel Segrè, Daniel Segrè
Published 2021-02-01

Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation

by Shany Ofaim, Raphy Zarecki, Seema Porob, Daniella Gat, Tamar Lahav, Yechezkel Kashi, Radi Aly, Hanan Eizenberg, Zeev Ronen, Shiri Freilich
Published 2020-08-01

Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment

by Itai Opatovsky, Diego Santos-Garcia, Zhepu Ruan, Tamar Lahav, Shany Ofaim, Laurence Mouton, Valérie Barbe, Jiandong Jiang, Einat Zchori-Fein, Shiri Freilich
Published 2018-05-01