Computational models with thermodynamic and composition features improve siRNA design

by Ogurtsov Aleksey Y, Spiridonov Alexey N, Shabalina Svetlana A
Published 2006-02-01

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothet...

by Wolf Yuri I, Shabalina Svetlana A, Grishin Nick V, Makarova Kira S, Koonin Eugene V
Published 2006-03-01

Evolution of alternative and constitutive regions of mammalian 5'UTRs

by Shabalina Svetlana A, Rogozin Igor B, Ogurtsov Aleksey Y, Resch Alissa M, Koonin Eugene V
Published 2009-04-01

Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome

by Matveeva Olga V, Foley Brian T, Nemtsov Vladimir A, Gesteland Raymond F, Matsufuji Senya, Atkins John F, Ogurtsov Aleksey Y, Shabalina Svetlana A
Published 2004-04-01