From days to hours: reporting clinically actionable variants from whole genome sequencing.

by Sumit Middha, Saurabh Baheti, Steven N Hart, Jean-Pierre A Kocher
Published 2014-01-01

SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations.

by Steven N Hart, Vivekananda Sarangi, Raymond Moore, Saurabh Baheti, Jaysheel D Bhavsar, Fergus J Couch, Jean-Pierre A Kocher
Published 2013-01-01

Perinatal Nutritional Reprogramming of the Epigenome Promotes Subsequent Development of Nonalcoholic Steatohepatitis

by Luz Helena Gutierrez Sanchez, Kyoko Tomita, Qianqian Guo, Kunimaro Furuta, Husam Alhuwaish, Petra Hirsova, Saurabh Baheti, Bonnie Alver, Ryan Hlady, Keith D. Robertson, Samar H. Ibrahim
Published 2018-12-01

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

by Saurabh Baheti, Xiaojia Tang, Daniel R. O’Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna R. Kalari
Published 2018-07-01

Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4

by Jacob R. Heldenbrand, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Matthew E. Hudson, Ravishankar K. Iyer, Michael T. Kalmbach, Katherine I. Kendig, Eric W. Klee, Nathan R. Mattson, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer
Published 2019-12-01

Recommendations for performance optimizations when using GATK3.8 and GATK4

by Jacob R Heldenbrand, Saurabh Baheti, Matthew A Bockol, Travis M Drucker, Steven N Hart, Matthew E Hudson, Ravishankar K Iyer, Michael T Kalmbach, Katherine I Kendig, Eric W Klee, Nathan R Mattson, Eric D Wieben, Mathieu Wiepert, Derek E Wildman, Liudmila S Mainzer
Published 2019-11-01

An expanded variant list and assembly annotation identifies multiple novel coding and noncoding genes for prostate cancer risk using a normal prostate tissue eQTL data set.

by Melissa S DeRycke, Melissa C Larson, Asha A Nair, Shannon K McDonnell, Amy J French, Lori S Tillmans, Shaun M Riska, Saurabh Baheti, Zachary C Fogarty, Nicholas B Larson, Daniel R O'Brien, John C Cheville, Liang Wang, Daniel J Schaid, Stephen N Thibodeau
Published 2019-01-01

Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy

by Katherine I. Kendig, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Jacob R. Heldenbrand, Mikel Hernaez, Matthew E. Hudson, Matthew E. Hudson, Michael T. Kalmbach, Eric W. Klee, Nathan R. Mattson, Christian A. Ross, Morgan Taschuk, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Derek E. Wildman, Liudmila S. Mainzer, Liudmila S. Mainzer
Published 2019-08-01

An integrated model of the transcriptome of HER2-positive breast cancer.

by Krishna R Kalari, Brian M Necela, Xiaojia Tang, Kevin J Thompson, Melissa Lau, Jeanette E Eckel-Passow, Jennifer M Kachergus, S Keith Anderson, Zhifu Sun, Saurabh Baheti, Jennifer M Carr, Tiffany R Baker, Poulami Barman, Derek C Radisky, Richard W Joseph, Sarah A McLaughlin, High-seng Chai, Stephan Camille, David Rossell, Yan W Asmann, E Aubrey Thompson, Edith A Perez
Published 2013-01-01