Transcriptome Analysis of a Spray Drying-Resistant Subpopulation Reveals a Zinc-Dependent Mechanism for Robustness in L. lactis SK11

by Annereinou R. Dijkstra, Annereinou R. Dijkstra, Annereinou R. Dijkstra, Marjo J. C. Starrenburg, Tilman Todt, Sacha A. F. T. van Hijum, Sacha A. F. T. van Hijum, Sacha A. F. T. van Hijum, Jeroen Hugenholtz, Peter A. Bron, Peter A. Bron
Published 2018-10-01

Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction.

by Thomas H A Ederveen, Lex Overmars, Sacha A F T van Hijum
Published 2013-01-01

Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network.

by Jimmy Omony, Anne de Jong, Jan Kok, Sacha A F T van Hijum
Published 2019-01-01

Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and...

by Yinghua Xiao, Sacha A F T van Hijum, Tjakko Abee, Marjon H J Wells-Bennik
Published 2015-01-01

Genome-wide prediction and validation of sigma70 promoters in Lactobacillus plantarum WCFS1.

by Tilman J Todt, Michiel Wels, Roger S Bongers, Roland S Siezen, Sacha A F T van Hijum, Michiel Kleerebezem
Published 2012-01-01

ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.

by Aldert Zomer, Peter Burghout, Hester J Bootsma, Peter W M Hermans, Sacha A F T van Hijum
Published 2012-01-01

Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis.

by Annereinou R Dijkstra, Wynand Alkema, Marjo J C Starrenburg, Jeroen Hugenholtz, Sacha A F T van Hijum, Peter A Bron
Published 2016-01-01

Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman.

by Kingsley C Anukam, Jean M Macklaim, Gregory B Gloor, Gregor Reid, Jos Boekhorst, Bernadet Renckens, Sacha A F T van Hijum, Roland J Siezen
Published 2013-01-01

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine

by Jacoline Gerritsen, Bastian Hornung, Bernadette Renckens, Sacha A.F.T. van Hijum, Vitor A.P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt
Published 2017-09-01

Bacillus pumilus reveals a remarkably high resistance to hydrogen peroxide provoked oxidative stress.

by Stefan Handtke, Rebecca Schroeter, Britta Jürgen, Karen Methling, Rabea Schlüter, Dirk Albrecht, Sacha A F T van Hijum, Johannes Bongaerts, Karl-Heinz Maurer, Michael Lalk, Thomas Schweder, Michael Hecker, Birgit Voigt
Published 2014-01-01

Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

by Thomas H. A. Ederveen, Gerben Ferwerda, Inge M. Ahout, Marloes Vissers, Ronald de Groot, Jos Boekhorst, Harro M. Timmerman, Martijn A. Huynen, Sacha A. F. T. van Hijum, Marien I. de Jonge
Published 2018-01-01

Natural variation in wild tomato trichomes; selecting metabolites that contribute to insect resistance using a random forest approach

by Ruy W. J. Kortbeek, Marc D. Galland, Aleksandra Muras, Frans M. van der Kloet, Bart André, Maurice Heilijgers, Sacha A. F. T. van Hijum, Michel A. Haring, Robert C. Schuurink, Petra M. Bleeker
Published 2021-07-01

Gut microbiome in ADHD and its relation to neural reward anticipation.

by Esther Aarts, Thomas H A Ederveen, Jilly Naaijen, Marcel P Zwiers, Jos Boekhorst, Harro M Timmerman, Sanne P Smeekens, Mihai G Netea, Jan K Buitelaar, Barbara Franke, Sacha A F T van Hijum, Alejandro Arias Vasquez
Published 2017-01-01

Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis

by Rebecca Rogier, Thomas H. A. Ederveen, Jos Boekhorst, Harm Wopereis, Jose U. Scher, Julia Manasson, Sanne J. C. M. Frambach, Jan Knol, Johan Garssen, Peter M. van der Kraan, Marije I. Koenders, Wim B. van den Berg, Sacha A. F. T. van Hijum, Shahla Abdollahi-Roodsaz
Published 2017-06-01

Correction: Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice...

by Rebecca Rogier, Thomas H A Ederveen, Harm Wopereis, Anita Hartog, Jos Boekhorst, Sacha A F T van Hijum, Jan Knol, Johan Garssen, Birgitte Walgreen, Monique M Helsen, Peter M van der Kraan, Peter L E M van Lent, Fons A J van de Loo, Shahla Abdollahi-Roodsaz, Marije I Koenders
Published 2019-01-01

Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice.

by Rebecca Rogier, Thomas H A Ederveen, Harm Wopereis, Anita Hartog, Jos Boekhorst, Sacha A F T van Hijum, Jan Knol, Johan Garssen, Birgitte Walgreen, Monique M Helsen, Peter M van der Kraan, Peter L E M van Lent, Fons A J van de Loo, Shahla Abdollahi-Roodsaz, Marije I Koenders
Published 2019-01-01

Phage-Derived Protein Induces Increased Platelet Activation and Is Associated with Mortality in Patients with Invasive Pneumococcal Disease

by Rahajeng N. Tunjungputri, Fredrick M. Mobegi, Amelieke J. Cremers, Christa E. van der Gaast-de Jongh, Gerben Ferwerda, Jacques F. Meis, Nel Roeleveld, Stephen D. Bentley, Alexander S. Pastura, Sacha A. F. T. van Hijum, Andre J. van der Ven, Quirijn de Mast, Aldert Zomer, Marien I. de Jonge, Liise-anne Pirofski
Published 2017-01-01