Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results [v1; ref status: indexed, http://f1000r.es/3qs]

by Ruth Isserlin, Daniele Merico, Veronique Voisin, Gary D. Bader
Published 2014-07-01

AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations [version 1; referees: 2 approved]

by Mike Kucera, Ruth Isserlin, Arkady Arkhangorodsky, Gary D. Bader
Published 2016-07-01

Social Network: a Cytoscape app for visualizing co-authorship networks [version 3; referees: 1 approved, 2 approved with reservations]

by Victor Kofia, Ruth Isserlin, Alison M.J. Buchan, Gary D. Bader
Published 2015-12-01

Enrichment map: a network-based method for gene-set enrichment visualization and interpretation.

by Daniele Merico, Ruth Isserlin, Oliver Stueker, Andrew Emili, Gary D Bader
Published 2010-11-01

Control of tissue development and cell diversity by cell cycle-dependent transcriptional filtering

by Maria Abou Chakra, Ruth Isserlin, Thinh N Tran, Gary D Bader
Published 2021-07-01

RCy3: Network biology using Cytoscape from within R [version 2; peer review: 3 approved]

by Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Published 2019-11-01

RCy3: Network biology using Cytoscape from within R [version 1; peer review: 2 approved]

by Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Published 2019-10-01

RCy3: Network biology using Cytoscape from within R [version 3; peer review: 3 approved]

by Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Published 2019-12-01

Structure-templated predictions of novel protein interactions from sequence information.

by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W V Hogue
Published 2007-09-01

Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression

by Shivani Kamdar, Ruth Isserlin, Theodorus Van der Kwast, Alexandre R. Zlotta, Gary D. Bader, Neil E. Fleshner, Bharati Bapat
Published 2019-03-01

Distinct DNA methylation patterns associated with treatment resistance in metastatic castration resistant prostate cancer

by Madonna R. Peter, Misha Bilenky, Alastair Davies, Ruth Isserlin, Gary D. Bader, Neil E. Fleshner, Martin Hirst, Amina Zoubeidi, Bharati Bapat
Published 2021-03-01

netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks [version 2; peer review: 2 approved]

by Shraddha Pai, Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad Ahmad Shah, Luca Giudice, Rosalba Giugno, Anne Krogh Nøhr, Jan Baumbach, Gary D. Bader
Published 2021-01-01

Cardioprotective Signature of Short-Term Caloric Restriction.

by Hossein Noyan, Omar El-Mounayri, Ruth Isserlin, Sara Arab, Abdul Momen, Henry S Cheng, Jun Wu, Talat Afroze, Ren-Ke Li, Jason E Fish, Gary D Bader, Mansoor Husain
Published 2015-01-01