Performance Comparison of Deep Learning Autoencoders for Cancer Subtype Detection Using Multi-Omics Data

by Edian F. Franco, Pratip Rana, Aline Cruz, Víctor V. Calderón, Vasco Azevedo, Rommel T. J. Ramos, Preetam Ghosh
Published 2021-04-01

Evaluation of the Common Molecular Basis in Alzheimer’s and Parkinson’s Diseases

by Pratip Rana, Edian F. Franco, Yug Rao, Khajamoinuddin Syed, Debmalya Barh, Vasco Azevedo, Rommel T. J. Ramos, Preetam Ghosh
Published 2019-07-01

PanWeb: A web interface for pan-genomic analysis.

by Yan Pantoja, Kenny Pinheiro, Allan Veras, Fabrício Araújo, Ailton Lopes de Sousa, Luis Carlos Guimarães, Artur Silva, Rommel T J Ramos
Published 2017-01-01

Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data

by Regiane Kawasaki, Rafael A. Baraúna, Artur Silva, Marta S. P. Carepo, Rui Oliveira, Rodolfo Marques, Rommel T. J. Ramos, Maria P. C. Schneider
Published 2016-01-01

Extended Spectrum Beta-Lactamase-Producing Gram-Negative Bacteria Recovered From an Amazonian Lake Near the City of Belém, Brazil

by Dhara Y. Freitas, Susana Araújo, Adriana R. C. Folador, Rommel T. J. Ramos, Juliana S. N. Azevedo, Marta Tacão, Artur Silva, Isabel Henriques, Rafael A. Baraúna
Published 2019-02-01

GapBlaster-A Graphical Gap Filler for Prokaryote Genomes.

by Pablo H C G de Sá, Fábio Miranda, Adonney Veras, Diego Magalhães de Melo, Siomar Soares, Kenny Pinheiro, Luis Guimarães, Vasco Azevedo, Artur Silva, Rommel T J Ramos
Published 2016-01-01

Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of <i>Corynebacterium pseudotuberculosis</i>

by Edian F. Franco, Pratip Rana, Ana Lidia Queiroz Cavalcante, Artur Luiz da Silva, Anne Cybelle Pinto Gomide, Adriana R. Carneiro Folador, Vasco Azevedo, Preetam Ghosh, Rommel T. J. Ramos
Published 2020-07-01

PhageWeb – Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes

by Ailton Lopes de Sousa, Dener Maués, Amália Lobato, Edian F. Franco, Kenny Pinheiro, Fabrício Araújo, Yan Pantoja, Artur Luiz da Costa da Silva, Jefferson Morais, Rommel T. J. Ramos
Published 2018-12-01

PIPS: pathogenicity island prediction software.

by Siomar C Soares, Vinícius A C Abreu, Rommel T J Ramos, Louise Cerdeira, Artur Silva, Jan Baumbach, Eva Trost, Andreas Tauch, Raphael Hirata, Ana L Mattos-Guaraldi, Anderson Miyoshi, Vasco Azevedo
Published 2012-01-01

Molecular characterisation of dengue virus type 1 reveals lineage replacement during circulation in Brazilian territory

by Adriana Ribeiro Carneiro, Ana Cecília Ribeiro Cruz, Marcelo Vallinoto, Diego de Vasconcelos Melo, Rommel Thiago J Ramos, Daniele Barbosa Almeida Medeiros, Eliana Vieira Pinto da Silva, Pedro Fernando da Costa Vasconcelos
Published 2012-09-01

Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics.

by Rafael A Baraúna, Rommel T J Ramos, Adonney A O Veras, Kenny C Pinheiro, Leandro J Benevides, Marcus V C Viana, Luís C Guimarães, Judy M Edman, Sharon J Spier, Vasco Azevedo, Artur Silva
Published 2017-01-01

Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses

by Pablo H.C.G. de Sá, Adonney A.O. Veras, Adriana R. Carneiro, Rafael A. Baraúna, Luís C. Guimarães, Kenny C. Pinheiro, Anne C. Pinto, Siomar C. Soares, Maria P.C. Schneider, Vasco Azevedo, Artur Silva, Rommel T.J. Ramos
Published 2015-12-01

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.

by Jerônimo C Ruiz, Vívian D'Afonseca, Artur Silva, Amjad Ali, Anne C Pinto, Anderson R Santos, Aryanne A M C Rocha, Débora O Lopes, Fernanda A Dorella, Luis G C Pacheco, Marcília P Costa, Meritxell Z Turk, Núbia Seyffert, Pablo M R O Moraes, Siomar C Soares, Sintia S Almeida, Thiago L P Castro, Vinicius A C Abreu, Eva Trost, Jan Baumbach, Andreas Tauch, Maria Paula C Schneider, John McCulloch, Louise T Cerdeira, Rommel T J Ramos, Adhemar Zerlotini, Anderson Dominitini, Daniela M Resende, Elisângela M Coser, Luciana M Oliveira, André L Pedrosa, Carlos U Vieira, Cláudia T Guimarães, Daniela C Bartholomeu, Diana M Oliveira, Fabrício R Santos, Élida Mara Rabelo, Francisco P Lobo, Glória R Franco, Ana Flávia Costa, Ieso M Castro, Sílvia Regina Costa Dias, Jesus A Ferro, José Miguel Ortega, Luciano V Paiva, Luiz R Goulart, Juliana Franco Almeida, Maria Inês T Ferro, Newton P Carneiro, Paula R K Falcão, Priscila Grynberg, Santuza M R Teixeira, Sérgio Brommonschenkel, Sérgio C Oliveira, Roberto Meyer, Robert J Moore, Anderson Miyoshi, Guilherme C Oliveira, Vasco Azevedo
Published 2011-04-01