GenomePeek—an online tool for prokaryotic genome and metagenome analysis

by Katelyn McNair, Robert A. Edwards
Published 2015-06-01

Growth Score: a single metric to define growth in 96-well phenotype assays

by Daniel A. Cuevas, Robert A. Edwards
Published 2018-04-01

Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

by Ramy Karam Aziz, Ramy Karam Aziz, Ramy Karam Aziz, Bhakti eDwivedi, Sajia eAkhter, Mya eBreitbart, Robert A Edwards, Robert A Edwards
Published 2015-05-01

Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics

by Ellen Kuang, Matthew Marney, Daniel Cuevas, Robert A. Edwards, Erica M. Forsberg
Published 2020-04-01

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

by Genivaldo Gueiros Z. Silva, Daniel A. Cuevas, Bas E. Dutilh, Robert A. Edwards
Published 2014-06-01

A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation

by Daniel Cazares, Adrian Cazares, Wendy Figueroa, Gabriel Guarneros, Robert A. Edwards, Pablo Vinuesa
Published 2021-02-01

Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes

by Katelyn McNair, Carol L. Ecale Zhou, Brian Souza, Stephanie Malfatti, Robert A. Edwards
Published 2021-01-01

Kullback Leibler divergence in complete bacterial and phage genomes

by Sajia Akhter, Ramy K. Aziz, Mona T. Kashef, Eslam S. Ibrahim, Barbara Bailey, Robert A. Edwards
Published 2017-11-01

Multivariate analysis of functional metagenomes

by Elizabeth A. Dinsdale, Robert A. Edwards, Robert A. Edwards, Robert A. Edwards, Barbara eBailey, Imre eTuba, Sajia eAkhter, Katelyn eMcNair, Robert eSchmieder, Naneh eApkarian, Michelle eCreek, Eric eGuan, Mayra eHernandez, Katherine eIsaacs, Chris ePeterson, Todd eRegh, Vadim ePonomarenko
Published 2013-04-01

Diversification of the Salmonella fimbriae: a model of macro- and microevolution.

by Min Yue, Shelley C Rankin, Ryan T Blanchet, James D Nulton, Robert A Edwards, Dieter M Schifferli
Published 2012-01-01

Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents

by Beverly J. French, Yan Wei Lim, Brian J. Zgliczynski, Robert A. Edwards, Forest Rohwer, Stuart A. Sandin
Published 2020-04-01

PhANNs, a fast and accurate tool and web server to classify phage structural proteins.

by Vito Adrian Cantu, Peter Salamon, Victor Seguritan, Jackson Redfield, David Salamon, Robert A Edwards, Anca M Segall
Published 2020-11-01

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

by Felipe H. Coutinho, Cynthia B. Silveira, Gustavo B. Gregoracci, Cristiane C. Thompson, Robert A. Edwards, Corina P. D. Brussaard, Bas E. Dutilh, Fabiano L. Thompson
Published 2017-07-01

Modeling of the Coral Microbiome: the Influence of Temperature and Microbial Network

by Laís F. O. Lima, Maya Weissman, Micheal Reed, Bhavya Papudeshi, Amanda T. Alker, Megan M. Morris, Robert A. Edwards, Samantha J. de Putron, Naveen K. Vaidya, Elizabeth A. Dinsdale
Published 2020-03-01

Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes

by Bhavya Papudeshi, J. Matthew Haggerty, Michael Doane, Megan M. Morris, Kevin Walsh, Douglas T. Beattie, Dnyanada Pande, Parisa Zaeri, Genivaldo G. Z. Silva, Fabiano Thompson, Robert A. Edwards, Elizabeth A. Dinsdale
Published 2017-11-01

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.

by Ramy K Aziz, Scott Devoid, Terrence Disz, Robert A Edwards, Christopher S Henry, Gary J Olsen, Robert Olson, Ross Overbeek, Bruce Parrello, Gordon D Pusch, Rick L Stevens, Veronika Vonstein, Fangfang Xia
Published 2012-01-01

Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux.

by Erin A Lynch, Morgan G I Langille, Aaron Darling, Elizabeth G Wilbanks, Caitlin Haltiner, Katie S Y Shao, Michael O Starr, Clotilde Teiling, Timothy T Harkins, Robert A Edwards, Jonathan A Eisen, Marc T Facciotti
Published 2012-01-01

Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes

by Cynthia B. Silveira, Felipe H. Coutinho, Giselle S. Cavalcanti, Sean Benler, Michael P. Doane, Elizabeth A. Dinsdale, Robert A. Edwards, Ronaldo B. Francini-Filho, Cristiane C. Thompson, Antoni Luque, Forest L. Rohwer, Fabiano Thompson
Published 2020-02-01

A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes

by Maria I. Rojas, Giselle S. Cavalcanti, Katelyn McNair, Sean Benler, Amanda T. Alker, Ana G. Cobián-Güemes, Melissa Giluso, Kyle Levi, Forest Rohwer, Barbara A. Bailey, Sinem Beyhan, Robert A. Edwards, Nicholas J. Shikuma
Published 2020-07-01

Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome.

by Ani Qu, Jennifer M Brulc, Melissa K Wilson, Bibiana F Law, James R Theoret, Lynn A Joens, Michael E Konkel, Florent Angly, Elizabeth A Dinsdale, Robert A Edwards, Karen E Nelson, Bryan A White
Published 2008-08-01