Development of two loop-mediated isothermal amplification (LAMP) genomics-informed diagnostic protocols for rapid detection of Pantoea species on rice

by Kossi Kini, Issa Wonni, Drissa Silué, Ralf Koebnik
Published 2021-01-01

Molecular Epidemiology of <i>Xanthomonas</i> <i>euvesicatoria</i> Strains from the Balkan Peninsula Revealed by a New Multiple-Locus Variable-Number Tandem-Repeat Analysis Scheme

by Taca Vancheva, Nevena Bogatzevska, Penka Moncheva, Saša Mitrev, Christian Vernière, Ralf Koebnik
Published 2021-03-01

A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane

by Nuria Gómez-Santos, Timo Glatter, Ralf Koebnik, Magdalena Anna Świątek-Połatyńska, Lotte Søgaard-Andersen
Published 2019-03-01

Isolation of atypical wheat-associated xanthomonads in Algeria

by Bahria KHENFOUS-DJEBARI, Mohamed KERKOUD, Marion FISCHER-LE SAUX, Traki BENHASSINE, Zouaoui BOUZNAD, Ralf KOEBNIK, Claude BRAGARD
Published 2020-01-01

An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains.

by Alvaro L Pérez-Quintero, Luis M Rodriguez-R, Alexis Dereeper, Camilo López, Ralf Koebnik, Boris Szurek, Sebastien Cunnac
Published 2013-01-01

CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri

by Kwanho Jeong, Alejandra Muñoz-Bodnar, Nathalia Arias Rojas, Lucie Poulin, Luis Miguel Rodriguez-R, Lionel Gagnevin, Christian Vernière, Olivier Pruvost, Ralf Koebnik
Published 2019-12-01

Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso.

by Martine Bangratz, Issa Wonni, Kossi Kini, Moussa Sondo, Christophe Brugidou, Gilles Béna, Fatoumata Gnacko, Mariam Barro, Ralf Koebnik, Drissa Silué, Charlotte Tollenaere
Published 2020-01-01

The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles

by Ofir Bahar, Rory Pruitt, Dee Dee Luu, Benjamin Schwessinger, Arsalan Daudi, Furong Liu, Randy Ruan, Lisa Fontaine-Bodin, Ralf Koebnik, Pamela Ronald
Published 2014-01-01

Comparative Genomics Identifies a Novel Conserved Protein, HpaT, in Proteobacterial Type III Secretion Systems that Do Not Possess the Putative Translocon Protein HrpF

by Céline Pesce, Céline Pesce, Jonathan M. Jacobs, Jonathan M. Jacobs, Edwige Berthelot, Marion Perret, Taca Vancheva, Taca Vancheva, Claude Bragard, Ralf Koebnik
Published 2017-06-01

Enterobacter cloacae, an Emerging Plant-Pathogenic Bacterium Affecting Chili Pepper Seedlings

by Tanahiri García-González, Hilda Karina Sáenz-Hidalgo, Hilda Victoria Silva-Rojas, Carlos Morales-Nieto, Taca Vancheva, Ralf Koebnik, Graciela Dolores Ávila-Quezada
Published 2018-02-01

Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

by Nicolas W. G. Chen, Laurana Serres-Giardi, Mylène Ruh, Martial Briand, Sophie Bonneau, Armelle Darrasse, Valérie Barbe, Lionel Gagnevin, Ralf Koebnik, Marie-Agnès Jacques
Published 2018-08-01

Whole-genome sequence and analysis of Xanthomonas euvesicatoria strains and reassessment of the species

by Jeri D. Barak, Jeri D. Barak, Taca Vancheva, Taca Vancheva, Pierre Lefeuvre, Jeffrey B. Jones, Sujan Timilsina, Gerald V. Minsavage, Gary E. Vallad, Ralf Koebnik
Published 2016-12-01

A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage.

by Olivier Pruvost, Maxime Magne, Karine Boyer, Alice Leduc, Christophe Tourterel, Christine Drevet, Virginie Ravigné, Lionel Gagnevin, Fabien Guérin, Frédéric Chiroleu, Ralf Koebnik, Valérie Verdier, Christian Vernière
Published 2014-01-01

Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryz...

by Hinda Doucouré, Hinda Doucouré, Alvaro L. Pérez-Quintero, Ganna Reshetnyak, Cheick Tekete, Cheick Tekete, Florence Auguy, Emilie Thomas, Ralf Koebnik, Boris Szurek, Ousmane Koita, Valérie Verdier, Sébastien Cunnac
Published 2018-08-01

The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought

by A. Paola Zuluaga, Przemyslaw Bidzinski, Emilie Chanclud, Aurelie Ducasse, Bastien Cayrol, Michael Gomez Selvaraj, Manabu Ishitani, Alain Jauneau, Laurent Deslandes, Thomas Kroj, Corinne Michel, Boris Szurek, Ralf Koebnik, Jean-Benoit Morel
Published 2020-08-01

Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.

by Tuan T Tran, Alvaro L Pérez-Quintero, Issa Wonni, Sara C D Carpenter, Yanhua Yu, Li Wang, Jan E Leach, Valérie Verdier, Sébastien Cunnac, Adam J Bogdanove, Ralf Koebnik, Mathilde Hutin, Boris Szurek
Published 2018-06-01

Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated <i>Xanthomonas</i>

by Vittoria Catara, Jaime Cubero, Joël F. Pothier, Eran Bosis, Claude Bragard, Edyta Đermić, Maria C. Holeva, Marie-Agnès Jacques, Francoise Petter, Olivier Pruvost, Isabelle Robène, David J. Studholme, Fernando Tavares, Joana G. Vicente, Ralf Koebnik, Joana Costa
Published 2021-04-01

A Pathovar of Xanthomonas oryzae Infecting Wild Grasses Provides Insight Into the Evolution of Pathogenicity in Rice Agroecosystems

by Jillian M. Lang, Jillian M. Lang, Alvaro L. Pérez-Quintero, Alvaro L. Pérez-Quintero, Ralf Koebnik, Elysa DuCharme, Soungalo Sarra, Hinda Doucoure, Ibrahim Keita, Janet Ziegle, Jonathan M. Jacobs, Jonathan M. Jacobs, Jonathan M. Jacobs, Ricardo Oliva, Ousmane Koita, Boris Szurek, Valérie Verdier, Valérie Verdier, Jan E. Leach
Published 2019-04-01

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

by Mario L Arrieta-Ortiz, Luis M Rodríguez-R, Álvaro L Pérez-Quintero, Lucie Poulin, Ana C Díaz, Nathalia Arias Rojas, Cesar Trujillo, Mariana Restrepo Benavides, Rebecca Bart, Jens Boch, Tristan Boureau, Armelle Darrasse, Perrine David, Thomas Dugé de Bernonville, Paula Fontanilla, Lionel Gagnevin, Fabien Guérin, Marie-Agnès Jacques, Emmanuelle Lauber, Pierre Lefeuvre, Cesar Medina, Edgar Medina, Nathaly Montenegro, Alejandra Muñoz Bodnar, Laurent D Noël, Juan F Ortiz Quiñones, Daniela Osorio, Carolina Pardo, Prabhu B Patil, Stéphane Poussier, Olivier Pruvost, Isabelle Robène-Soustrade, Robert P Ryan, Javier Tabima, Oscar G Urrego Morales, Christian Vernière, Sébastien Carrere, Valérie Verdier, Boris Szurek, Silvia Restrepo, Camilo López, Ralf Koebnik, Adriana Bernal
Published 2013-01-01