Integrating Autoimmune Risk Loci with Gene-Expression Data Identifies Specific Pathogenic Immune Cell Subsets

by Hu, Xinli, Kim, Hyun, Stahl, Eli, Plenge, Robert, Daly, Mark J., Raychaudhuri, Soumya
Published 2011

Identifying relationships among genomic disease regions: predicting= pathogenic SNP associations and rare deletions

by Raychaudhuri, Soumya, Plenge, Robert M., Rossin, Elizabeth, Ng, Aylwin C. Y., Purcell, Shaun M., Sklar, Pamela, Scolnick, Edward Mark, Xavier, Ramnik J., Altshuler, David, Daly, Mark J.
Published 2010

Electronic Medical Records for Discovery Research in Rheumatoid Arthritis

by Szolovits, Peter, Liao, Katherine P., Cai, Tianxi, Gainer, Vivian, Goryachev, Sergey, Zeng-Treitler, Qing, Raychaudhuri, Soumya, Churchill, Susanne, Murphy, Shawn N., Kohane, Isaac, Karlson, Elizabeth W., Plenge, Robert M.
Published 2012

Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions

by Daly, Mark J., Altshuler, David, Xavier, Ramnik J., Sklar, Pamela, Purcell, Shaun M., International Schizophrenia Consortium, Ng, Aylwin C. Y., Scolnick, Edward Mark, Rossin, Elizabeth, Plenge, Robert M., Raychaudhuri, Soumya
Published 2010

Quantifying Missing Heritability at Known GWAS Loci

by Gusev, Alexander, Bhatia, Gaurav, Zaitlen, Noah, Vilhjalmsson, Bjarni J., Diogo, Dorothee, Stahl, Eli A., Gregersen, Peter K., Worthington, Jane, Klareskog, Lars, Raychaudhuri, Soumya, Plenge, Robert M., Pasaniuc, Bogdan, Price, Alkes L.
Published 2014

Improving the power of genetic association tests with imperfect phenotype derived from electronic medical records

by Sinnott, Jennifer A., Dai, Wei, Liao, Katherine P., Shaw, Stanley Y., Ananthakrishnan, Ashwin N., Gainer, Vivian S., Karlson, Elizabeth W., Churchill, Susanne, Szolovits, Peter, Murphy, Shawn N., Kohane, Isaac, Plenge, Robert, Cai, Tianxi
Published 2016

Improving Case Definition of Crohnʼs Disease and Ulcerative Colitis in Electronic Medical Records Using Natural Language Processing

by Ananthakrishnan, Ashwin N., Cai, Tianxi, Savova, Guergana, Cheng, Su-Chun, Chen, Pei, Perez, Raul Guzman, Gainer, Vivian, Murphy, Shawn N., Szolovits, Peter, Xia, Zongqi, Shaw, Stanley, Churchill, Susanne, Karlson, Elizabeth W., Kohane, Isaac, Plenge, Robert M., Liao, Katherine P.
Published 2014

Autoantibodies, autoimmune risk alleles and clinical associations in rheumatoid arthritis cases and non-RA controls in the electronic medical records

by Liao, Katherine P., Kurreeman, Fina, Li, Gang, Duclos, Grant, Murphy, Shawn N., Guzman, Raul, Cai, Tianxi, Gupta, Namrata, Gainer, Vivian, Schur, Peter, Cui, Jing, Denny, Joshua C., Szolovits, Peter, Churchill, Susanne, Kohane, Isaac, Karlson, Elizabeth W., Plenge, Robert M.
Published 2014

Normalization of Plasma 25-Hydroxy Vitamin D Is Associated with Reduced Risk of Surgery in Crohn's Disease

by Ananthakrishnan, Ashwin N., Cagan, Andrew, Gainer, Vivian, Cai, Tianxi, Cheng, Su-Chun, Savova, Guergana, Chen, Pei, Szolovits, Peter, Xia, Zongqi, De Jager, Philip L., Shaw, Stanley Y., Churchill, Susanne, Karlson, Elizabeth W., Kohane, Isaac, Plenge, Robert M., Murphy, Shawn N., Liao, Katherine P.
Published 2014

Genetic Basis of Autoantibody Positive and Negative Rheumatoid Arthritis Risk in a Multi-ethnic Cohort Derived from Electronic Health Records

by Kurreeman, Fina, Liao, Katherine P., Chibnik, Lori B., Hickey, Brendan, Stahl, Eli, Gainer, Vivian, Li, Gang, Bry, Lynn, Mahan, Scott, Ardlie, Kristin, Thomson, Brian, Szolovits, Peter, Churchill, Susanne, Murphy, Shawn N., Cai, Tianxi, Raychaudhuri, Soumya, Kohane, Isaac, Karlson, Elizabeth W., Plenge, Robert M.
Published 2015

Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts

by Liao, Katherine P., Ananthakrishnan, Ashwin N., Kumar, Vishesh, Xia, Zongqi, Cagan, Andrew, Gainer, Vivian S., Goryachev, Sergey, Chen, Pei, Savova, Guergana K., Agniel, Denis, Churchill, Susanne, Lee, Jaeyoung, Murphy, Shawn N., Plenge, Robert M., Szolovits, Peter, Kohane, Isaac, Shaw, Stanley Y., Karlson, Elizabeth W., Cai, Tianxi
Published 2015

Similar Risk of Depression and Anxiety Following Surgery or Hospitalization for Crohn's Disease and Ulcerative Colitis

by Ananthakrishnan, Ashwin N., Gainer, Vivian, Cai, Tianxi, Perez, Raul Guzman, Cheng, Su-Chun, Savova, Guergana, Chen, Pei, Szolovits, Peter, Xia, Zongqi, De Jager, Philip L., Shaw, Stanley, Churchill, Susanne, Karlson, Elizabeth W., Kohane, Isaac, Perlis, Roy H., Plenge, Robert M., Murphy, Shawn N., Liao, Katherine P.
Published 2014

Modeling Disease Severity in Multiple Sclerosis Using Electronic Health Records

by Xia, Zongqi, Secor, Elizabeth, Chibnik, Lori B., Bove, Riley M., Cheng, Suchun, Chitnis, Tanuja, Cagan, Andrew, Gainer, Vivian, Chen, Pei, Liao, Katherine P., Shaw, Stanley Y., Ananthakrishnan, Ashwin N., Szolovits, Peter, Weiner, Howard L., Karlson, Elizabeth W., Murphy, Shawn N., Savova, Guergana K., Cai, Tianxi, Churchill, Susanne, Plenge, Robert M., Kohane, Isaac, De Jager, Philip L.
Published 2014