RNA velocity—current challenges and future perspectives

by Volker Bergen, Ruslan A Soldatov, Peter V Kharchenko, Fabian J Theis
Published 2021-08-01

dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments

by Viktor Petukhov, Jimin Guo, Ninib Baryawno, Nicolas Severe, David T. Scadden, Maria G. Samsonova, Peter V. Kharchenko
Published 2018-06-01

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA

by Blue B. Lake, Simone Codeluppi, Yun C. Yung, Derek Gao, Jerold Chun, Peter V. Kharchenko, Sten Linnarsson, Kun Zhang
Published 2017-07-01

“Jump Start and Gain” Model for Dosage Compensation in Drosophila Based on Direct Sequencing of Nascent Transcripts

by Francesco Ferrari, Annette Plachetka, Artyom A. Alekseyenko, Youngsook L. Jung, Fatih Ozsolak, Peter V. Kharchenko, Peter J. Park, Mitzi I. Kuroda
Published 2013-11-01

“Jump Start and Gain” Model for Dosage Compensation in Drosophila Based on Direct Sequencing of Nascent Transcripts

by Francesco Ferrari, Annette Plachetka, Artyom A. Alekseyenko, Youngsook L. Jung, Fatih Ozsolak, Peter V. Kharchenko, Peter J. Park, Mitzi I. Kuroda
Published 2013-11-01

Single cell transcriptomics of primate sensory neurons identifies cell types associated with chronic pain

by Jussi Kupari, Dmitry Usoskin, Marc Parisien, Daohua Lou, Yizhou Hu, Michael Fatt, Peter Lönnerberg, Mats Spångberg, Bengt Eriksson, Nikolaos Barkas, Peter V. Kharchenko, Karin Loré, Samar Khoury, Luda Diatchenko, Patrik Ernfors
Published 2021-03-01

Author Correction: Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis

by Ulrich Pfisterer, Viktor Petukhov, Samuel Demharter, Johanna Meichsner, Jonatan J. Thompson, Mykhailo Y. Batiuk, Andrea Asenjo-Martinez, Navneet A. Vasistha, Ashish Thakur, Jens Mikkelsen, Istvan Adorjan, Lars H. Pinborg, Tune H. Pers, Jakob von Engelhardt, Peter V. Kharchenko, Konstantin Khodosevich
Published 2020-11-01

Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis

by Ulrich Pfisterer, Viktor Petukhov, Samuel Demharter, Johanna Meichsner, Jonatan J. Thompson, Mykhailo Y. Batiuk, Andrea Asenjo-Martinez, Navneet A. Vasistha, Ashish Thakur, Jens Mikkelsen, Istvan Adorjan, Lars H. Pinborg, Tune H. Pers, Jakob von Engelhardt, Peter V. Kharchenko, Konstantin Khodosevich
Published 2020-10-01

Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain.

by Nicole C Riddle, Youngsook L Jung, Tingting Gu, Artyom A Alekseyenko, Dalal Asker, Hongxing Gui, Peter V Kharchenko, Aki Minoda, Annette Plachetka, Yuri B Schwartz, Michael Y Tolstorukov, Mitzi I Kuroda, Vincenzo Pirrotta, Gary H Karpen, Peter J Park, Sarah C R Elgin
Published 2012-09-01

Correction: Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

by Artyom A. Alekseyenko, Joshua W. K. Ho, Shouyong Peng, Marnie Gelbart, Michael Y. Tolstorukov, Annette Plachetka, Peter V. Kharchenko, Youngsook L. Jung, Andrey A. Gorchakov, Erica Larschan, Tingting Gu, Aki Minoda, Nicole C. Riddle, Yuri B. Schwartz, Sarah C. R. Elgin, Gary H. Karpen, Vincenzo Pirrotta, Mitzi I. Kuroda, Peter J. Park
Published 2014-01-01

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

by Artyom A Alekseyenko, Joshua W K Ho, Shouyong Peng, Marnie Gelbart, Michael Y Tolstorukov, Annette Plachetka, Peter V Kharchenko, Youngsook L Jung, Andrey A Gorchakov, Erica Larschan, Tingting Gu, Aki Minoda, Nicole C Riddle, Yuri B Schwartz, Sarah C R Elgin, Gary H Karpen, Vincenzo Pirrotta, Mitzi I Kuroda, Peter J Park
Published 2012-01-01

Correction: Sequence-Specific Targeting of Dosage Compensation in Favors an Active Chromatin Context.

by Artyom A. Alekseyenko, Joshua W. K. Ho, Shouyong Peng, Marnie Gelbart, Michael Y. Tolstorukov, Annette Plachetka, Peter V. Kharchenko, Youngsook L. Jung, Andrey A. Gorchakov, Erica Larschan, Tingting Gu, Aki Minoda, Nicole C. Riddle, Yuri B. Schwartz, Sarah C. R. Elgin, Gary H. Karpen, Vincenzo Pirrotta, Mitzi I. Kuroda, Peter J. Park
Published 2014-01-01

Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth

by Jan Krivanek, Ruslan A. Soldatov, Maria Eleni Kastriti, Tatiana Chontorotzea, Anna Nele Herdina, Julian Petersen, Bara Szarowska, Marie Landova, Veronika Kovar Matejova, Lydie Izakovicova Holla, Ulrike Kuchler, Ivana Vidovic Zdrilic, Anushree Vijaykumar, Anamaria Balic, Pauline Marangoni, Ophir D. Klein, Vitor C. M. Neves, Val Yianni, Paul T. Sharpe, Tibor Harkany, Brian D. Metscher, Marc Bajénoff, Mina Mina, Kaj Fried, Peter V. Kharchenko, Igor Adameyko
Published 2020-09-01