Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells.

by Zhifei Luo, Peggy J Farnham
Published 2020-01-01

The Enigmatic HOX Genes: Can We Crack Their Code?

by Zhifei Luo, Suhn K. Rhie, Peggy J. Farnham
Published 2019-03-01

A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13

by Zhifei Luo, Suhn Kyong Rhie, Fides D. Lay, Peggy J. Farnham
Published 2017-11-01

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes.

by Seth Frietze, Henriette O'Geen, Kimberly R Blahnik, Victor X Jin, Peggy J Farnham
Published 2010-12-01

CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops

by Yu Guo, Andrew A. Perez, Dennis J. Hazelett, Gerhard A. Coetzee, Suhn Kyong Rhie, Peggy J. Farnham
Published 2018-10-01

A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome

by Suhn Kyong Rhie, Andrew A. Perez, Fides D. Lay, Shannon Schreiner, Jiani Shi, Jenevieve Polin, Peggy J. Farnham
Published 2019-09-01

Epigenetic modulation of miR-122 facilitates human embryonic stem cell self-renewal and hepatocellular carcinoma proliferation.

by Christine J Jung, Sushma Iyengar, Kimberly R Blahnik, Tijess P Ajuha, Joy X Jiang, Peggy J Farnham, Mark Zern
Published 2011-01-01

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs.

by Henriette O'Geen, Sharon L Squazzo, Sushma Iyengar, Kim Blahnik, John L Rinn, Howard Y Chang, Roland Green, Peggy J Farnham
Published 2007-06-01

TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma.

by Daniel J Mullen, Chunli Yan, Diane S Kang, Beiyun Zhou, Zea Borok, Crystal N Marconett, Peggy J Farnham, Ite A Offringa, Suhn Kyong Rhie
Published 2020-09-01

Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner

by Henriette O’Geen, Sofie L. Bates, Sakereh S. Carter, Karly A. Nisson, Julian Halmai, Kyle D. Fink, Suhn K. Rhie, Peggy J. Farnham, David J. Segal
Published 2019-05-01

Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.

by Kimberly R Blahnik, Lei Dou, Lorigail Echipare, Sushma Iyengar, Henriette O'Geen, Erica Sanchez, Yongjun Zhao, Marco A Marra, Martin Hirst, Joseph F Costello, Ian Korf, Peggy J Farnham
Published 2011-02-01

LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq data.

by Rui Wang, Hang-Kai Hsu, Adam Blattler, Yisong Wang, Xun Lan, Yao Wang, Pei-Yin Hsu, Yu-Wei Leu, Tim H-M Huang, Peggy J Farnham, Victor X Jin
Published 2013-01-01

Comprehensive functional annotation of 77 prostate cancer risk loci.

by Dennis J Hazelett, Suhn Kyong Rhie, Malaina Gaddis, Chunli Yan, Daniel L Lakeland, Simon G Coetzee, Ellipse/GAME-ON consortium, Practical consortium, Brian E Henderson, Houtan Noushmehr, Wendy Cozen, Zsofia Kote-Jarai, Rosalind A Eeles, Douglas F Easton, Christopher A Haiman, Wange Lu, Peggy J Farnham, Gerhard A Coetzee
Published 2014-01-01