Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications

by Erik Dassi, Pavel V. Baranov, Pavel V. Baranov, Mattia Pelizzola
Published 2020-12-01

Exploring Evidence of Non-coding RNA Translation With Trips-Viz and GWIPS-Viz Browsers

by Oza Zaheed, Stephen J. Kiniry, Pavel V. Baranov, Pavel V. Baranov, Kellie Dean
Published 2021-08-01

Codon size reduction as the origin of the triplet genetic code.

by Pavel V Baranov, Maxime Venin, Gregory Provan
Published 2009-05-01

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

by Patrick B. F. O’Connor, Dmitry E. Andreev, Pavel V. Baranov
Published 2016-10-01

Opposite Expression Patterns of Spry3 and p75NTR in Cerebellar Vermis Suggest a Male-Specific Mechanism of Autism Pathogenesis

by Zhenfei Ning, John M. Williams, Romika Kumari, Pavel V. Baranov, Tom Moore
Published 2019-06-01

Simplicity DiffExpress: A Bespoke Cloud-Based Interface for RNA-seq Differential Expression Modeling and Analysis

by Cintia C. Palu, Cintia C. Palu, Marcelo Ribeiro-Alves, Yanxin Wu, Yanxin Wu, Brendan Lawlor, Brendan Lawlor, Pavel V. Baranov, Pavel V. Baranov, Brian Kelly, Paul Walsh, Paul Walsh
Published 2019-05-01

TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response

by Dmitry E Andreev, Maxim Arnold, Stephen J Kiniry, Gary Loughran, Audrey M Michel, Dmitrii Rachinskii, Pavel V Baranov
Published 2018-06-01

Systematic analysis of the PTEN 5′ leader identifies a major AUU initiated proteoform

by Ioanna Tzani, Ivaylo P. Ivanov, Dmitri E. Andreev, Ruslan I. Dmitriev, Kellie A. Dean, Pavel V. Baranov, John F. Atkins, Gary Loughran
Published 2016-01-01

Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression

by Dmitry E Andreev, Patrick BF O'Connor, Ciara Fahey, Elaine M Kenny, Ilya M Terenin, Sergey E Dmitriev, Paul Cormican, Derek W Morris, Ivan N Shatsky, Pavel V Baranov
Published 2015-01-01

Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F

by Jennifer Chu, Wenhan Zhang, Regina Cencic, Patrick B.F. O’Connor, Francis Robert, William G. Devine, Asher Selznick, Thomas Henkel, William C. Merrick, Lauren E. Brown, Pavel V. Baranov, John A. Porco, Jr., Jerry Pelletier
Published 2020-02-01

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling

by Gesche K. Gerresheim, Jochen Bathke, Audrey M. Michel, Dmitri E. Andreev, Lyudmila A. Shalamova, Oliver Rossbach, Pan Hu, Dieter Glebe, Markus Fricke, Manja Marz, Alexander Goesmann, Stephen J. Kiniry, Pavel V. Baranov, Ivan N. Shatsky, Michael Niepmann
Published 2019-03-01