Negative Selection by Spiral Inertial Microfluidics Improves Viral Recovery and Sequencing from Blood

by Choi, Kyungyong, Ryu, Hyunryul, Siddle, Katherine J., Piantadosi, Anne, Freimark, Lisa, Park, Daniel J., Sabeti, Pardis, Han, Jongyoon
Published 2019

Ultra‐high spatial resolution BOLD fMRI in humans using combined segmented‐accelerated VFA‐FLEET with a recursive RF pulse design

by Berman, Avery J. L., Grissom, William A., Witzel, Thomas, Nasr, Shahin, Park, Daniel J., Setsompop, Kawin, Polimeni, Jonathan R.
Published 2022

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking

by Daniels, Rachel F., Mahesh, Nira, Rosen, David, Angelino, Elaine, Neafsey, Daniel E., Park, Daniel J., Sabeti, Pardis C., Wiegand, Roger C., Volkman, Sarah K., Milner, Danny A., Wirth, Dyann F.
Published 2010

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking

by Daniels, Rachel F., Volkman, Sarah K., Milner, Danny A., Mahesh, Nira, Neafsey, Daniel E., Park, Daniel J., Rosen, David, Angelino, Elaine, Sabeti, Pardis C., Wirth, Dyann F., Wiegand, Roger C.
Published 2009

Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics

by Kugelman, Jeffrey R., Sanchez-Lockhart, Mariano, Andersen, Kristian G., Gire, Stephen, Park, Daniel J., Lin, Aaron E., Wohl, Shirlee, Sabeti, Pardis C., Kuhn, Jens H., Palacios, Gustavo F., Sealfon, Rachel Sima
Published 2015

Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum

by Dharia, Neekesh V, Sidhu, Amar Bir Singh, Cassera, Maria Belen, Westenberger, Scott J, Bopp, Selina ER, Eastman, Rich T, Plouffe, David, Batalov, Serge, Volkman, Sarah K, Zhou, Yingyao, Fidock, David A, Winzeler, Elizabeth A, Park, Daniel J., Wirth, Dyann F.
Published 2010

Identifying Recent Adaptations in Large-Scale Genomic Data

by Andersen, Kristian G., Tabrizi, Shervin, Winnicki, Sarah, Yen, Angela, Park, Daniel J, Griesemer, Dustin, Karlsson, Elinor K., Wong, Sunny H, Cabili, Moran N., Adegbola, Richard A, Bamezai, Rameshwar N.K, Hill, Adrian V. S., Vannberg, Fredrik O, Rinn, John L., Schaffner, Stephen F, Sabeti, Pardis C, Grossman, Sharon Rachel, Shlyakhter, Ilya 1975-, Lander, Eric Steven
Published 2014

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

by Metsky, Hayden C., Siddle, Katherine J., Gladden-Young, Adrianne, Qu, James, Yang, David K., Brehio, Patrick, Goldfarb, Andrew, Piantadosi, Anne, Wohl, Shirley, Carter, Amber, Lin, Aaron E., Barnes, Kayla G., Tully, Damien C., Corleis, Bjӧrn, Hennigan, Scott, Barbosa-Lima, Giselle, Vieira, Yasmine R., Paul, Lauren M., Tan, Amanda L., Garcia, Kimberly F., Parham, Leda A., Odia, Ikponmwosa, Eromon, Philomena, Folarin, Onikepe A., Goba, Augustine, Simon, Simon-Lorière, Etienne, Hensley, Lisa, Balmaseda, Angel, Harris, Eva, Kwon, Douglas, Allen, Todd M., Runstadler, Jonathan A., Smole, Sandra, Bozza, Fernando A., Souza, Thiago M. L., Isern, Sharon, Michael, Scott F., Lorenzana, Ivette, Gehrke, Lee, Bosch, Irene, Ebel, Gregory, Grant, Donald S., Happi, Christian T., Park, Daniel J., Gnirke, Andreas, Sabeti, Pardis C., Matranga, Christian B.
Published 2021

Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

by Kuhn, Jens H., Andersen, Kristian G., Bào, Yīmíng, Bavari, Sina, Becker, Stephan, Bennett, Richard S., Bergman, Nicholas H., Blinkova, Olga, Bradfute, Steven, Brister, J. Rodney, Bukreyev, Alexander, Chandran, Kartik, Chepurnov, Alexander A., Davey, Robert A., Dietzgen, Ralf G., Doggett, Norman A., Dolnik, Olga, Dye, John M., Enterlein, Sven, Fenimore, Paul W., Formenty, Pierre, Freiberg, Alexander N., Garry, Robert F., Garza, Nicole L., Gire, Stephen K., Gonzalez, Jean-Paul, Griffiths, Anthony, Happi, Christian T., Hensley, Lisa E., Herbert, Andrew S., Hevey, Michael C., Hoenen, Thomas, Honko, Anna N., Ignatyev, Georgy M., Jahrling, Peter B., Johnson, Joshua C., Johnson, Karl M., Kindrachuk, Jason, Klenk, Hans-Dieter, Kobinger, Gary, Kochel, Tadeusz J., Lackemeyer, Matthew G., Lackner, Daniel F., Leroy, Eric M., Lever, Mark S., Mühlberger, Elke, Netesov, Sergey V., Olinger, Gene G., Omilabu, Sunday A., Palacios, Gustavo, Panchal, Rekha G., Park, Daniel J., Patterson, Jean L., Paweska, Janusz T., Peters, Clarence J., Pettitt, James, Pitt, Louise, Radoshitzky, Sheli R., Ryabchikova, Elena I., Saphire, Erica Ollmann, Sabeti, Pardis C., Sealfon, Rachel Sima, Shestopalov, Aleksandr M., Smither, Sophie J., Sullivan, Nancy J., Swanepoel, Robert, Takada, Ayato, Towner, Jonathan S., Van der Groen, Guido, Volchkov, Viktor E., Volchkova, Valentina A., Wahl-Jensen, Victoria, Warren, Travis K., Warfield, Kelly L., Weidmann, Manfred, Nichol, Stuart T.
Published 2019

The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response

by Botti-Lodovico, Yolanda, Nair, Parvathy, Nosamiefan, Dolo, Stremlau, Matthew, Schaffner, Stephen, Agignoae, Sebastian V., Aiyepada, John Oke, Ajogbasile, Fehintola V., Akpede, George O., Alhasan, Foday, Andersen, Kristian G., Asogun, Danny A., Ayodeji, Oladele Oluwafemi, Badiane, Aida S., Barnes, Kayla, Bauer, Matthew R., Bell-Kareem, Antoinette, Benard, Muoebonam Ekene, Benevolence, Ebo Ohomoime, Blessing, Osiemi, Boehm, Chloe K., Boisen, Matthew L., Bond, Nell G., Branco, Luis M., Butts, Michael J., Carter, Amber, Colubri, Andres, Deme, Awa B., DeRuff, Katherine C., Diédhiou, Younousse, Edamhande, Akhilomen Patience, Elhamoumi, Siham, Engel, Emily J., Eromon, Philomena, Fallah, Mosoka, Folarin, Onikepe A., Fry, Ben, Garry, Robert, Gaye, Amy, Gbakie, Michael, Gevao, Sahr M., Gionet, Gabrielle, Gladden-Young, Adrianne, Goba, Augustine, Gomis, Jules Francois, Happi, Anise N., Houghton, Mary, Ihekwuazu, Chikwe, Iruolagbe, Christopher Ojemiega, Jackson, Jonathan, Jalloh, Simbirie, Johnson, Jeremy, Kanneh, Lansana, Kayode, Adeyemi, Kemball, Molly, Kingsley, Ojide Chiedozie, Koroma, Veronica, Kotliar, Dylan, Mehta, Samar, Metsky, Hayden C., Michael, Airende, Mirhashemi, Marzieh Ezzaty, Modjarrad, Kayvon, Momoh, Mambu, Myhrvold, Cameron A., Naregose, Okonofua Grace, Ndiaye, Tolla, Ndiaye, Mouhamadou, Ndiaye, Aliou, Normandin, Erica, Odia, Ikponmwosa, Oguzie, Judith Uche, Okogbenin, Sylvanus A., Okokhere, Peter O., Okolie, Johnson, Olawoye, Idowu B., Olumade, Testimony J., Oluniyi, Paul E., Omoregie, Omigie, Park, Daniel J., Paye, Mariétou Faye, Petros, Brittany A., Philippakis, Anthony A., Priscilla, Abechi, Ricks, Alan, Rimoin, Anne, Sandi, John Demby, Schieffelin, John S., Schreiber, Monica, Seck, Mame Cheikh, Siddiqui, Sameed, Siddle, Katherine, Smither, Allison R., Sy, Mouhamad, Sy, Ngayo, Tomkins-Tinch, Christopher H., Tomori, Oyewale, Ugwu, Chinedu, Uwanibe, Jessica N., Uyigue, Eghosasere Anthonia, Victoria, Dada Ireti, Vinzé, Anika, Vodzak, Megan E., Welch, Nicole, Wurie, Haja Isatta, Zoumarou, Daba, Grant, Donald S., Ndiaye, Daouda, MacInnis, Bronwyn, Sabeti, Pardis C., Happi, Christian
Published 2021

Identification and Functional Validation of the Novel Antimalarial Resistance Locus PF10_0355 in Plasmodium falciparum

by Tyne, Daria Van, Angelino, Elaine, Barnes, Kayla G., Rosen, David M., Lukens, Amanda K., Daniels, Rachel F., Milner, Danny A., Becker, Justin S., Yamins, Daniel, Ndiaye, Daouda, Sarr, Ousmane, Mboup, Soulyemane, Happi, Christian, Furlotte, Nicholas A., Eskin, Eleazar, Kang, Hyun Min, Hartl, Daniel L., Neafsey, Daniel E., Cortese, Joseph F., Daniels, Rachel F., Johnson, Charles A., Shlyakhter, Ilya, Grossman, Sharon Rachel, Birren, Bruce W., Wiegand, Roger C., Wirth, Dyann F., Volkman, Sarah K., Park, Daniel, Schaffner, Stephen F, Karlsson, Elinor, Lander, Eric Steven, Sabeti, Pardis
Published 2012