Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface design.

by P Douglas Renfrew, Eun Jung Choi, Richard Bonneau, Brian Kuhlman
Published 2012-01-01

The 2010 Rosetta developers meeting: macromolecular prediction and design meets reproducible publishing.

by P Douglas Renfrew, Gabrielle Campbell, Charlie E M Strauss, Richard Bonneau
Published 2011-01-01

Structure-based protein function prediction using graph convolutional networks

by Vladimir Gligorijević, P. Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C. Taylor, Ian M. Fisk, Hera Vlamakis, Ramnik J. Xavier, Rob Knight, Kyunghyun Cho, Richard Bonneau
Published 2021-05-01

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).

by Sergey Lyskov, Fang-Chieh Chou, Shane Ó Conchúir, Bryan S Der, Kevin Drew, Daisuke Kuroda, Jianqing Xu, Brian D Weitzner, P Douglas Renfrew, Parin Sripakdeevong, Benjamin Borgo, James J Havranek, Brian Kuhlman, Tanja Kortemme, Richard Bonneau, Jeffrey J Gray, Rhiju Das
Published 2013-01-01

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

by Kevin Drew, P Douglas Renfrew, Timothy W Craven, Glenn L Butterfoss, Fang-Chieh Chou, Sergey Lyskov, Brooke N Bullock, Andrew Watkins, Jason W Labonte, Michael Pacella, Krishna Praneeth Kilambi, Andrew Leaver-Fay, Brian Kuhlman, Jeffrey J Gray, Philip Bradley, Kent Kirshenbaum, Paramjit S Arora, Rhiju Das, Richard Bonneau
Published 2013-01-01

Better together: Elements of successful scientific software development in a distributed collaborative community.

by Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti, Andrew M Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland Dunbrack, Tanja Kortemme, Andrew Leaver-Fay, Charlie E M Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J Gray, Richard Bonneau
Published 2020-05-01