Platform-Independent Genome-Wide Pattern of DNA Copy-Number Alterations Predicting Astrocytoma Survival and Response to Treatment Revealed by the GSVD Formulated as a Comparative S...

by Katherine A Aiello, Orly Alter
Published 2016-01-01

Mathematically universal and biologically consistent astrocytoma genotype encodes for transformation and predicts survival phenotype

by Katherine A. Aiello, Sri Priya Ponnapalli, Orly Alter
Published 2018-09-01

GSVD comparison of patient-matched normal and tumor aCGH profiles reveals global copy-number alterations predicting glioblastoma multiforme survival.

by Cheng H Lee, Benjamin O Alpert, Preethi Sankaranarayanan, Orly Alter
Published 2012-01-01

Tensor GSVD of patient- and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations enco...

by Preethi Sankaranarayanan, Theodore E Schomay, Katherine A Aiello, Orly Alter
Published 2015-01-01

Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA.

by Chaitanya Muralidhara, Andrew M Gross, Robin R Gutell, Orly Alter
Published 2011-01-01

SVD identifies transcript length distribution functions from DNA microarray data and reveals evolutionary forces globally affecting GBM metabolism.

by Nicolas M Bertagnolli, Justin A Drake, Jason M Tennessen, Orly Alter
Published 2013-01-01

A higher-order generalized singular value decomposition for comparison of global mRNA expression from multiple organisms.

by Sri Priya Ponnapalli, Michael A Saunders, Charles F Van Loan, Orly Alter
Published 2011-01-01

GSVD- and tensor GSVD-uncovered patterns of DNA copy-number alterations predict adenocarcinomas survival in general and in response to platinum

by Matthew W. Bradley, Katherine A. Aiello, Sri Priya Ponnapalli, Heidi A. Hanson, Orly Alter
Published 2019-09-01

Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival

by Sri Priya Ponnapalli, Matthew W. Bradley, Karen Devine, Jay Bowen, Sara E. Coppens, Kristen M. Leraas, Brett A. Milash, Fuqiang Li, Huijuan Luo, Shi Qiu, Kui Wu, Huanming Yang, Carl T. Wittwer, Cheryl A. Palmer, Randy L. Jensen, Julie M. Gastier-Foster, Heidi A. Hanson, Jill S. Barnholtz-Sloan, Orly Alter
Published 2020-06-01