Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples

by Jake Lin, Lenka Kramna, Reija Autio, Heikki Hyöty, Matti Nykter, Ondrej Cinek
Published 2017-05-01

Polymorphisms in the innate immune IFIH1 gene, frequency of enterovirus in monthly fecal samples during infancy, and islet autoimmunity.

by Elisabet Witsø, German Tapia, Ondrej Cinek, Flemming Michael Pociot, Lars C Stene, Kjersti S Rønningen
Published 2011-01-01

Stool metabolome-microbiota evaluation among children and adolescents with obesity, overweight, and normal-weight using 1H NMR and 16S rRNA gene profiling.

by José Diógenes Jaimes, Andrea Slavíčková, Jakub Hurych, Ondřej Cinek, Ben Nichols, Lucie Vodolánová, Karel Černý, Jaroslav Havlík
Published 2021-01-01

Enterovirus RNA in peripheral blood may be associated with the variants of rs1990760, a common type 1 diabetes associated polymorphism in IFIH1.

by Ondrej Cinek, German Tapia, Elisabet Witsø, Lenka Kramna, Katerina Holkova, Trond Rasmussen, Lars C Stene, Kjersti S Rønningen
Published 2012-01-01

Saffold Virus, a Human Cardiovirus, and Risk of Persistent Islet Autoantibodies in the Longitudinal Birth Cohort Study MIDIA.

by German Tapia, Håkon Bøås, Eric J de Muinck, Ondrej Cinek, Lars C Stene, Peter A Torjesen, Trond Rasmussen, Kjersti S Rønningen
Published 2015-01-01

Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media

by Saara Sillanpaa, Lenka Kramna, Sami Oikarinen, Markku Sipila, Markus Rautiainen, Janne Aittoniemi, Jussi Laranne, Heikki Hyoty, Ondrej Cinek, Paul D. Fey
Published 2017-03-01

Chronic Mild Hyperglycemia in GCK-MODY Patients Does Not Increase Carotid Intima-Media Thickness

by Stepanka Pruhova, Petra Dusatkova, Pavel J. Kraml, Michal Kulich, Zdena Prochazkova, Jan Broz, Jaroslav Zikmund, Ondrej Cinek, Michal Andel, Oluf Pedersen, Torben Hansen, Jan Lebl
Published 2013-01-01

Treated Autoimmune Thyroid Disease Is Associated with a Decreased Quality of Life among Young Persons with Type 1 Diabetes

by Alena Spirkova, Petra Dusatkova, Monika Peckova, Stanislava Kolouskova, Marta Snajderova, Barbora Obermannova, Katerina Stechova, Tamara Hrachovinova, Jiri Mares, Ondrej Cinek, Jan Lebl, Zdenek Sumnik, Stepanka Pruhova
Published 2015-01-01

Blastocystis in the faeces of children from six distant countries: prevalence, quantity, subtypes and the relation to the gut bacteriome

by Ondrej Cinek, Katerina Polackova, Rasha Odeh, Abeer Alassaf, Lenka Kramná, MaryAnn Ugochi Ibekwe, Edna Siima Majaliwa, Gunduz Ahmadov, Bashir Mukhtar Elwasila Elmahi, Hanan Mekki, Sami Oikarinen, Jan Lebl, Mohammed Ahmed Abdullah
Published 2021-08-01

Long-term biodiversity intervention shapes health-associated commensal microbiota among urban day-care children

by Marja I. Roslund, Riikka Puhakka, Noora Nurminen, Sami Oikarinen, Nathan Siter, Mira Grönroos, Ondřej Cinek, Lenka Kramná, Ari Jumpponen, Olli H. Laitinen, Juho Rajaniemi, Heikki Hyöty, Aki Sinkkonen, Damiano Cerrone, Mira Grönroos, Nan Hui, Iida Mäkelä, Noora Nurminen, Sami Oikarinen, Anirudra Parajuli, Riikka Puhakka, Marja I. Roslund, Mika Saarenpää, Laura Soininen, Yan Sun, Heli K. Vari, Olli H. Laitinen, Juho Rajaniemi, Heikki Hyöty, Aki Sinkkonen
Published 2021-12-01

Molecular Epidemiology and Evolutionary Trajectory of Emerging Echovirus 30, Europe

by Kimberley S.M. Benschop, Eeva K. Broberg, Emma Hodcroft, Dennis Schmitz, Jan Albert, Anda Baicus, Jean-Luc Bailly, Gudrun Baldvinsdottir, Natasa Berginc, Soile Blomqvist, Sindy Böttcher, Mia Brytting, Erika Bujaki, Maria Cabrerizo, Cristina Celma, Ondrej Cinek, Eric C.J. Claas, Jeroen Cremer, Jonathan Dean, Jennifer L. Dembinski, Iryna Demchyshyna, Sabine Diedrich, Susanne Dudman, Jake Dunning, Robert Dyrdak, Mary Emmanouil, Agnes Farkas, Cillian De Gascun, Guillaume Fournier, Irina Georgieva, Ruben Gonzalez-Sanz, Jolanda van Hooydonk-Elving, Anne J. Jääskeläinen, Ruta Jancauskaite, Kathrin Keeren, Thea K. Fischer, Sidsel Krokstad, Lubomira Nikolaeva–Glomb, Ludmila Novakova, Sofie E. Midgley, Audrey Mirand, Richard Molenkamp, Ursula Morley, Joël Mossong, Svajune Muralyte, Jean-Luc Murk, Trung Nguyen, Svein A. Nordbø, Riikka Österback, Suzan Pas, Laura Pellegrinelli, Vassiliki Pogka, Birgit Prochazka, Petra Rainetova, Marc Van Ranst, Lieuwe Roorda, Isabelle Schuffenecker, Rob Schuurman, Asya Stoyanova, Kate Templeton, Jaco J. Verweij, Androniki Voulgari-Kokota, Tytti Vuorinen, Elke Wollants, Katja C. Wolthers, Katherina Zakikhany, Richard Neher, Heli Harvala, Peter Simmonds
Published 2021-06-01