RNA-Seq gene profiling--a systematic empirical comparison.

by Nuno A Fonseca, John Marioni, Alvis Brazma
Published 2014-01-01

Gene classification based on amino acid motifs and residues: the DLX (distal-less) test case.

by Nuno A Fonseca, Cristina P Vieira, Jorge Vieira
Published 2009-06-01

Comparative Genomics of <i>Xanthomonas</i><i>euroxanthea</i> and <i>Xanthomonas arboricola</i> pv. <i>juglandis</i> Strains Isolated from a Single Walnut Host Tree

by Camila Fernandes, Leonor Martins, Miguel Teixeira, Jochen Blom, Joël F. Pothier, Nuno A. Fonseca, Fernando Tavares
Published 2021-03-01

Convergent evolution at the gametophytic self-incompatibility system in Malus and Prunus.

by Bruno Aguiar, Jorge Vieira, Ana E Cunha, Nuno A Fonseca, Amy Iezzoni, Steve van Nocker, Cristina P Vieira
Published 2015-01-01

Gastric Microbiome Diversities in Gastric Cancer Patients from Europe and Asia Mimic the Human Population Structure and Are Partly Driven by Microbiome Quantitative Trait Loci

by Bruno Cavadas, Rui Camacho, Joana C. Ferreira, Rui M. Ferreira, Ceu Figueiredo, Alvis Brazma, Nuno A. Fonseca, Luísa Pereira
Published 2020-08-01

Inoculated Cell Density as a Determinant Factor of the Growth Dynamics and Metastatic Efficiency of a Breast Cancer Murine Model.

by Ana C Gregório, Nuno A Fonseca, Vera Moura, Manuela Lacerda, Paulo Figueiredo, Sérgio Simões, Sérgio Dias, João Nuno Moreira
Published 2016-01-01

Shedding Light on the African Enigma: In Vitro Testing of <i>Homo sapiens-Helicobacter pylori</i> Coevolution

by Bruno Cavadas, Marina Leite, Nicole Pedro, Ana C. Magalhães, Joana Melo, Marcelo Correia, Valdemar Máximo, Rui Camacho, Nuno A. Fonseca, Ceu Figueiredo, Luísa Pereira
Published 2021-01-01

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

by Yiqun Zhang, Fengju Chen, Nuno A. Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa, Zemin Zhang, Alvis Brazma, PCAWG Transcriptome Working Group, PCAWG Structural Variation Working Group, Chad J. Creighton, PCAWG Consortium
Published 2020-02-01

The Drosophila melanogaster methuselah gene: a novel gene with ancient functions.

by Ana Rita Araújo, Micael Reis, Helder Rocha, Bruno Aguiar, Ramiro Morales-Hojas, Sandra Macedo-Ribeiro, Nuno A Fonseca, David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P Vieira, Jorge Vieira
Published 2013-01-01

The Enhanced Efficacy of Intracellular Delivery of Doxorubicin/C6-Ceramide Combination Mediated by the F3 Peptide/Nucleolin System Is Supported by the Downregulation of the PI3K/Ak...

by Ana F. Cruz, Mariana B. Caleiras, Nuno A. Fonseca, Nélio Gonçalves, Vera M. Mendes, Susana F. Sampaio, Vera Moura, Joana B. Melo, Ramiro D. Almeida, Bruno Manadas, Sérgio Simões, João N. Moreira
Published 2021-06-01

An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis Profile

by Olivia Estévez, Olivia Estévez, Luis Anibarro, Luis Anibarro, Luis Anibarro, Elina Garet, Elina Garet, Ángeles Pallares, Laura Barcia, Laura Calviño, Cremildo Maueia, Tufária Mussá, Tufária Mussá, Florentino Fdez-Riverola, Florentino Fdez-Riverola, Florentino Fdez-Riverola, Daniel Glez-Peña, Daniel Glez-Peña, Daniel Glez-Peña, Miguel Reboiro-Jato, Miguel Reboiro-Jato, Miguel Reboiro-Jato, Hugo López-Fernández, Hugo López-Fernández, Hugo López-Fernández, Nuno A. Fonseca, Nuno A. Fonseca, Rajko Reljic, África González-Fernández, África González-Fernández
Published 2020-07-01

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

by Bidesh Mahata, Jhuma Pramanik, Louise van der Weyden, Krzysztof Polanski, Gozde Kar, Angela Riedel, Xi Chen, Nuno A. Fonseca, Kousik Kundu, Lia S. Campos, Edward Ryder, Graham Duddy, Izabela Walczak, Klaus Okkenhaug, David J. Adams, Jacqueline D. Shields, Sarah A. Teichmann
Published 2020-07-01

Cell surface Nucleolin represents a novel cellular target for neuroblastoma therapy

by Chiara Brignole, Veronica Bensa, Nuno A. Fonseca, Genny Del Zotto, Silvia Bruno, Ana F. Cruz, Fabiana Malaguti, Barbara Carlini, Fabio Morandi, Enzo Calarco, Patrizia Perri, Vera Moura, Laura Emionite, Michele Cilli, Francesco De Leonardis, Annalisa Tondo, Loredana Amoroso, Massimo Conte, Alberto Garaventa, Angela R. Sementa, Maria V. Corrias, Mirco Ponzoni, Joao N. Moreira, Fabio Pastorino
Published 2021-06-01

A user guide for the online exploration and visualization of PCAWG data

by Mary J. Goldman, Junjun Zhang, Nuno A. Fonseca, Isidro Cortés-Ciriano, Qian Xiang, Brian Craft, Elena Piñeiro-Yáñez, Brian D. O’Connor, Wojciech Bazant, Elisabet Barrera, Alfonso Muñoz-Pomer, Robert Petryszak, Anja Füllgrabe, Fatima Al-Shahrour, Maria Keays, David Haussler, John N. Weinstein, Wolfgang Huber, Alfonso Valencia, Peter J. Park, Irene Papatheodorou, Jingchun Zhu, Vincent Ferretti, Miguel Vazquez
Published 2020-07-01

Tumour gene expression signature in primary melanoma predicts long-term outcomes

by Manik Garg, Dominique-Laurent Couturier, Jérémie Nsengimana, Nuno A. Fonseca, Matthew Wongchenko, Yibing Yan, Martin Lauss, Göran B. Jönsson, Julia Newton-Bishop, Christine Parkinson, Mark R. Middleton, D. Timothy Bishop, Sarah McDonald, Nikki Stefanos, John Tadross, Ismael A. Vergara, Serigne Lo, Felicity Newell, James S. Wilmott, John F. Thompson, Georgina V. Long, Richard A. Scolyer, Pippa Corrie, David J. Adams, Alvis Brazma, Roy Rabbie
Published 2021-02-01