Identification of m6A-Associated RNA Binding Proteins Using an Integrative Computational Framework

by Yiqian Zhang, Michiaki Hamada, Michiaki Hamada, Michiaki Hamada, Michiaki Hamada
Published 2021-03-01

LncRRIsearch: A Web Server for lncRNA-RNA Interaction Prediction Integrated With Tissue-Specific Expression and Subcellular Localization Data

by Tsukasa Fukunaga, Tsukasa Fukunaga, Junichi Iwakiri, Junichi Iwakiri, Yukiteru Ono, Michiaki Hamada, Michiaki Hamada, Michiaki Hamada, Michiaki Hamada, Michiaki Hamada, Michiaki Hamada
Published 2019-05-01

RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines

by Chao Zeng, Michiaki Hamada
Published 2020-07-01

Identifying sequence features that drive ribosomal association for lncRNA

by Chao Zeng, Michiaki Hamada
Published 2018-12-01

Parallelized Latent Dirichlet Allocation Provides a Novel Interpretability of Mutation Signatures in Cancer Genomes

by Taro Matsutani, Michiaki Hamada
Published 2020-09-01

MoAIMS: efficient software for detection of enriched regions of MeRIP-Seq

by Yiqian Zhang, Michiaki Hamada
Published 2020-03-01

DeepM6ASeq: prediction and characterization of m6A-containing sequences using deep learning

by Yiqian Zhang, Michiaki Hamada
Published 2018-12-01

Association analysis of repetitive elements and R-loop formation across species

by Chao Zeng, Masahiro Onoguchi, Michiaki Hamada
Published 2021-01-01

Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data

by Chao Zeng, Tsukasa Fukunaga, Michiaki Hamada
Published 2018-05-01

Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs

by Takafumi Chishima, Junichi Iwakiri, Michiaki Hamada
Published 2018-01-01

CentroidAlign-Web: A Fast and Accurate Multiple Aligner for Long Non-Coding RNAs

by Michiaki Hamada, Haruka Yonemoto, Kiyoshi Asai
Published 2013-03-01

Computational prediction of lncRNA-mRNA interactions by integrating tissue specificity in human transcriptome

by Junichi Iwakiri, Goro Terai, Michiaki Hamada
Published 2017-06-01

Impact of human gene annotations on RNA-seq differential expression analysis

by Yu Hamaguchi, Chao Zeng, Michiaki Hamada
Published 2021-10-01

Generalized centroid estimators in bioinformatics.

by Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai
Published 2011-02-01

Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

by Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori, Michiaki Hamada
Published 2020-06-01

Representation learning applications in biological sequence analysis

by Hitoshi Iuchi, Taro Matsutani, Keisuke Yamada, Natsuki Iwano, Shunsuke Sumi, Shion Hosoda, Shitao Zhao, Tsukasa Fukunaga, Michiaki Hamada
Published 2021-01-01

Long Non-Coding RNA CRNDE Is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling

by Satoshi Takahashi, Rintaro Noro, Masahiro Seike, Chao Zeng, Masaru Matsumoto, Akiko Yoshikawa, Shinji Nakamichi, Teppei Sugano, Mariko Hirao, Kuniko Matsuda, Michiaki Hamada, Akihiko Gemma
Published 2021-04-01