Variation in DNA Methylation Patterns is More Common among Maize Inbreds than among Tissues

by Steven R. Eichten, Matthew W. Vaughn, Peter J. Hermanson, Nathan M. Springer
Published 2013-07-01

Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways

by Sarah N. Anderson, Gregory J. Zynda, Jawon Song, Zhaoxue Han, Matthew W. Vaughn, Qing Li, Nathan M. Springer
Published 2018-06-01

Repliscan: a tool for classifying replication timing regions

by Gregory J. Zynda, Jawon Song, Lorenzo Concia, Emily E. Wear, Linda Hanley-Bowdoin, William F. Thompson, Matthew W. Vaughn
Published 2017-08-01

Genomic distribution of H3K9me2 and DNA methylation in a maize genome.

by Patrick T West, Qing Li, Lexiang Ji, Steven R Eichten, Jawon Song, Matthew W Vaughn, Robert J Schmitz, Nathan M Springer
Published 2014-01-01

Epigenomic consequences of immortalized plant cell suspension culture.

by Milos Tanurdzic, Matthew W Vaughn, Hongmei Jiang, Tae-Jin Lee, R Keith Slotkin, Bryon Sosinski, William F Thompson, R W Doerge, Robert A Martienssen
Published 2008-12-01

Epigenetic natural variation in Arabidopsis thaliana.

by Matthew W Vaughn, Milos Tanurdzić, Zachary Lippman, Hongmei Jiang, Robert Carrasquillo, Pablo D Rabinowicz, Neilay Dedhia, W Richard McCombie, Nicolas Agier, Agnès Bulski, Vincent Colot, R W Doerge, Robert A Martienssen
Published 2007-07-01

Spreading of heterochromatin is limited to specific families of maize retrotransposons.

by Steven R Eichten, Nathanael A Ellis, Irina Makarevitch, Cheng-Ting Yeh, Jonathan I Gent, Lin Guo, Karen M McGinnis, Xiaoyu Zhang, Patrick S Schnable, Matthew W Vaughn, R Kelly Dawe, Nathan M Springer
Published 2012-01-01

Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots.

by Emily E Wear, Jawon Song, Gregory J Zynda, Leigh Mickelson-Young, Chantal LeBlanc, Tae-Jin Lee, David O Deppong, George C Allen, Robert A Martienssen, Matthew W Vaughn, Linda Hanley-Bowdoin, William F Thompson
Published 2020-10-01

Heritable epigenetic variation among maize inbreds.

by Steve R Eichten, Ruth A Swanson-Wagner, James C Schnable, Amanda J Waters, Peter J Hermanson, Sanzhen Liu, Cheng-Ting Yeh, Yi Jia, Karla Gendler, Michael Freeling, Patrick S Schnable, Matthew W Vaughn, Nathan M Springer
Published 2011-11-01

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

by Tae-Jin Lee, Pete E Pascuzzi, Sharon B Settlage, Randall W Shultz, Milos Tanurdzic, Pablo D Rabinowicz, Margit Menges, Ping Zheng, Dorrie Main, James A H Murray, Bryon Sosinski, George C Allen, Robert A Martienssen, Linda Hanley-Bowdoin, Matthew W Vaughn, William F Thompson
Published 2010-06-01