Genome-scale modeling and human disease: an overview

by Matthew A Oberhardt, Erwin P Gianchandani
Published 2015-01-01

A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness.

by Raphy Zarecki, Matthew A Oberhardt, Leah Reshef, Uri Gophna, Eytan Ruppin
Published 2014-07-01

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

by Matthew A Oberhardt, Jacek Puchałka, Vítor A P Martins dos Santos, Jason A Papin
Published 2011-03-01

Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms.

by Raphy Zarecki, Matthew A Oberhardt, Keren Yizhak, Allon Wagner, Ella Shtifman Segal, Shiri Freilich, Christopher S Henry, Uri Gophna, Eytan Ruppin
Published 2014-01-01

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

by Jacek Puchałka, Matthew A Oberhardt, Miguel Godinho, Agata Bielecka, Daniela Regenhardt, Kenneth N Timmis, Jason A Papin, Vítor A P Martins dos Santos
Published 2008-10-01

Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.

by Matthew A Oberhardt, Raphy Zarecki, Leah Reshef, Fangfang Xia, Miquel Duran-Frigola, Rachel Schreiber, Christopher S Henry, Nir Ben-Tal, Daniel J Dwyer, Uri Gophna, Eytan Ruppin
Published 2016-01-01