Quantitative model of eukaryotic Cdk control through the Forkhead CONTROLLER

by Matteo Barberis
Published 2021-06-01

Simulation of Stimulation: Cytokine Dosage and Cell Cycle Crosstalk Driving Timing-Dependent T Cell Differentiation

by Matteo Barberis, Matteo Barberis, Tomáš Helikar, Paul Verbruggen
Published 2018-08-01

Sirtuins-Mediated System-Level Regulation of Mammalian Tissues at the Interface between Metabolism and Cell Cycle: A Systematic Review

by Parcival Maissan, Eva J. Mooij, Matteo Barberis
Published 2021-03-01

Complex Stability and an Irrevertible Transition Reverted by Peptide and Fibroblasts in a Dynamic Model of Innate Immunity

by Abulikemu Abudukelimu, Abulikemu Abudukelimu, Matteo Barberis, Matteo Barberis, Matteo Barberis, Frank Redegeld, Nilgun Sahin, Raju P. Sharma, Hans V. Westerhoff, Hans V. Westerhoff, Hans V. Westerhoff, Hans V. Westerhoff
Published 2020-02-01

Cell size at S phase initiation: an emergent property of the G1/S network.

by Matteo Barberis, Edda Klipp, Marco Vanoni, Lilia Alberghina
Published 2007-04-01

System-Level Scenarios for the Elucidation of T Cell-Mediated Germinal Center B Cell Differentiation

by Niels J. M. Verstegen, Niels J. M. Verstegen, Victor Ubels, Victor Ubels, Hans V. Westerhoff, Hans V. Westerhoff, S. Marieke van Ham, S. Marieke van Ham, Matteo Barberis, Matteo Barberis, Matteo Barberis
Published 2021-09-01

A Mechanistic Computational Model Reveals That Plasticity of CD4+ T Cell Differentiation Is a Function of Cytokine Composition and Dosage

by Bhanwar Lal Puniya, Robert G. Todd, Akram Mohammed, Deborah M. Brown, Deborah M. Brown, Matteo Barberis, Matteo Barberis, Tomáš Helikar
Published 2018-08-01

What influences DNA replication rate in budding yeast?

by Thomas W Spiesser, Christian Diener, Matteo Barberis, Edda Klipp
Published 2010-01-01

Predictable Irreversible Switching Between Acute and Chronic Inflammation

by Abulikemu Abudukelimu, Abulikemu Abudukelimu, Matteo Barberis, Matteo Barberis, Frank A. Redegeld, Nilgun Sahin, Hans V. Westerhoff, Hans V. Westerhoff, Hans V. Westerhoff
Published 2018-08-01

Computer-Aided Whole-Cell Design: Taking a Holistic Approach by Integrating Synthetic With Systems Biology

by Lucia Marucci, Lucia Marucci, Lucia Marucci, Matteo Barberis, Matteo Barberis, Matteo Barberis, Jonathan Karr, Oliver Ray, Paul R. Race, Paul R. Race, Miguel de Souza Andrade, Miguel de Souza Andrade, Claire Grierson, Claire Grierson, Stefan Andreas Hoffmann, Sophie Landon, Sophie Landon, Elibio Rech, Joshua Rees-Garbutt, Joshua Rees-Garbutt, Richard Seabrook, William Shaw, Christopher Woods, Christopher Woods
Published 2020-08-01

Integrative computational approach identifies drug targets in CD4+ T-cell-mediated immune disorders

by Bhanwar Lal Puniya, Rada Amin, Bailee Lichter, Robert Moore, Alex Ciurej, Sydney J. Bennett, Ab Rauf Shah, Matteo Barberis, Tomáš Helikar
Published 2021-01-01

A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle

by Christian Linke, Anastasia Chasapi, Alberto González-Novo, Istabrak Al Sawad, Silvia Tognetti, Edda Klipp, Mart Loog, Sylvia Krobitsch, Francesc Posas, Ioannis Xenarios, Matteo Barberis
Published 2017-03-01