"Dynamic range" of inferred phenotypic HIV drug resistance values in clinical practice.

by Luke C Swenson, Graham Pollock, Brian Wynhoven, Theresa Mo, Winnie Dong, Robert S Hogg, Julio S G Montaner, P Richard Harrigan
Published 2011-02-01

Technical and regulatory shortcomings of the TaqMan version 1 HIV viral load assay.

by Chanson J Brumme, Luke C Swenson, Brian Wynhoven, Benita Yip, Stuart Skinner, Viviane Dias Lima, Julio S G Montaner, P Richard Harrigan
Published 2012-01-01

Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing.

by Guinevere Q Lee, Luke C Swenson, Art F Y Poon, Jeffrey N Martin, Hiroyu Hatano, Steven G Deeks, P Richard Harrigan
Published 2012-01-01

Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data.

by Art F Y Poon, Luke C Swenson, Evelien M Bunnik, Diana Edo-Matas, Hanneke Schuitemaker, Angélique B van 't Wout, P Richard Harrigan
Published 2012-01-01

"Deep" sequencing accuracy and reproducibility using Roche/454 technology for inferring co-receptor usage in HIV-1.

by David J H F Knapp, Rachel A McGovern, Art F Y Poon, Xiaoyin Zhong, Dennison Chan, Luke C Swenson, Winnie Dong, P Richard Harrigan
Published 2014-01-01

Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing.

by Evelien M Bunnik, Luke C Swenson, Diana Edo-Matas, Wei Huang, Winnie Dong, Arne Frantzell, Christos J Petropoulos, Eoin Coakley, Hanneke Schuitemaker, P Richard Harrigan, Angélique B van 't Wout
Published 2011-06-01

HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins.

by Zabrina L Brumme, Mina John, Jonathan M Carlson, Chanson J Brumme, Dennison Chan, Mark A Brockman, Luke C Swenson, Iris Tao, Sharon Szeto, Pamela Rosato, Jennifer Sela, Carl M Kadie, Nicole Frahm, Christian Brander, David W Haas, Sharon A Riddler, Richard Haubrich, Bruce D Walker, P Richard Harrigan, David Heckerman, Simon Mallal
Published 2009-08-01