Inflammasome‐induced extracellular vesicles harbour distinct RNA signatures and alter bystander macrophage responses

by Christina F. Budden, Linden J. Gearing, Romina Kaiser, Lena Standke, Paul J. Hertzog, Eicke Latz
Published 2021-08-01

Making use of transcription factor enrichment to identify functional microRNA-regulons

by Pacôme B. Prompsy, John Toubia, Linden J. Gearing, Randle L. Knight, Samuel C. Forster, Cameron P. Bracken, Michael P. Gantier
Published 2021-01-01

shRNA-seq data analysis with edgeR [v1; ref status: indexed, http://f1000r.es/38s]

by Zhiyin Dai, Julie M. Sheridan, Linden J. Gearing, Darcy L. Moore, Shian Su, Ross A. Dickins, Marnie E. Blewitt, Matthew E. Ritchie
Published 2014-04-01

CiiiDER: A tool for predicting and analysing transcription factor binding sites.

by Linden J Gearing, Helen E Cumming, Ross Chapman, Alexander M Finkel, Isaac B Woodhouse, Kevin Luu, Jodee A Gould, Samuel C Forster, Paul J Hertzog
Published 2019-01-01

edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens [v2; ref status: indexed, http://f1000r.es/4kw]

by Zhiyin Dai, Julie M. Sheridan, Linden J. Gearing, Darcy L. Moore, Shian Su, Sam Wormald, Stephen Wilcox, Liam O'Connor, Ross A. Dickins, Marnie E. Blewitt, Matthew E. Ritchie
Published 2014-10-01

Concurrent Host-Pathogen Transcriptional Responses in a Clostridium perfringens Murine Myonecrosis Infection

by Lee-Yean Low, Paul F. Harrison, Jodee Gould, David R. Powell, Jocelyn M. Choo, Samuel C. Forster, Ross Chapman, Linden J. Gearing, Jackie K. Cheung, Paul Hertzog, Julian I. Rood, Jimmy D. Ballard
Published 2018-03-01

GILZ Regulates the Expression of Pro-Inflammatory Cytokines and Protects Against End-Organ Damage in a Model of Lupus

by Champa Nataraja, Wendy Dankers, Jacqueline Flynn, Jacinta P. W. Lee, Wendy Zhu, Fabien B. Vincent, Linden J. Gearing, Joshua Ooi, Mehnaz Pervin, Megan A. Cristofaro, Rochelle Sherlock, Md Abul Hasnat, James Harris, Eric F. Morand, Sarah A. Jones
Published 2021-04-01

Regulation of H3K4me3 at Transcriptional Enhancers Characterizes Acquisition of Virus-Specific CD8+ T Cell-Lineage-Specific Function

by Brendan E. Russ, Moshe Olshansky, Jasmine Li, Michelle L.T. Nguyen, Linden J. Gearing, Thi H.O. Nguyen, Matthew R. Olson, Hayley A. McQuilton, Simone Nüssing, Georges Khoury, Damian F.J. Purcell, Paul J. Hertzog, Sudha Rao, Stephen J. Turner
Published 2017-12-01

RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation.

by Jane A C Wilson, Natalie A Prow, Wayne A Schroder, Jonathan J Ellis, Helen E Cumming, Linden J Gearing, Yee Suan Poo, Adam Taylor, Paul J Hertzog, Francesca Di Giallonardo, Linda Hueston, Roger Le Grand, Bing Tang, Thuy T Le, Joy Gardner, Suresh Mahalingam, Pierre Roques, Phillip I Bird, Andreas Suhrbier
Published 2017-02-01

Mitochondrial arginase-2 is essential for IL-10 metabolic reprogramming of inflammatory macrophages

by Jennifer K. Dowling, Remsha Afzal, Linden J. Gearing, Mariana P. Cervantes-Silva, Stephanie Annett, Gavin M. Davis, Chiara De Santi, Nadine Assmann, Katja Dettmer, Daniel J. Gough, Glenn R. Bantug, Fidinny I. Hamid, Frances K. Nally, Conor P. Duffy, Aoife L. Gorman, Alex M. Liddicoat, Ed C. Lavelle, Christoph Hess, Peter J. Oefner, David K. Finlay, Gavin P. Davey, Tracy Robson, Annie M. Curtis, Paul J. Hertzog, Bryan R. G. Williams, Claire E. McCoy
Published 2021-03-01