Toward Personalized Control of Human Gut Bacterial Communities

by Lawrence A. David
Published 2018-03-01

Naught all zeros in sequence count data are the same

by Justin D. Silverman, Kimberly Roche, Sayan Mukherjee, Lawrence A. David
Published 2020-01-01

A phylogenetic transform enhances analysis of compositional microbiota data

by Justin D Silverman, Alex D Washburne, Sayan Mukherjee, Lawrence A David
Published 2017-02-01

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

by Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David
Published 2018-11-01

Correction to: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

by Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David
Published 2018-11-01

Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept

by Aspen T. Reese, Tyler R. Kartzinel, Brianna L. Petrone, Peter J. Turnbaugh, Robert M. Pringle, Lawrence A. David
Published 2019-10-01

Measuring and mitigating PCR bias in microbiota datasets.

by Justin D Silverman, Rachael J Bloom, Sharon Jiang, Heather K Durand, Eric Dallow, Sayan Mukherjee, Lawrence A David
Published 2021-07-01

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

by Alex D. Washburne, Justin D. Silverman, Jonathan W. Leff, Dominic J. Bennett, John L. Darcy, Sayan Mukherjee, Noah Fierer, Lawrence A. David
Published 2017-02-01

Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition

by Zachary C. Holmes, Justin D. Silverman, Holly K. Dressman, Zhengzheng Wei, Eric P. Dallow, Sarah C. Armstrong, Patrick C. Seed, John F. Rawls, Lawrence A. David
Published 2020-08-01

Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture

by Max M. Villa, Rachael J. Bloom, Justin D. Silverman, Heather K. Durand, Sharon Jiang, Anchi Wu, Eric P. Dallow, Shuqiang Huang, Lingchong You, Lawrence A. David
Published 2020-06-01

Quantification of cell edge velocities and traction forces reveals distinct motility modules during cell spreading.

by Benjamin J Dubin-Thaler, Jake M Hofman, Yunfei Cai, Harry Xenias, Ingrid Spielman, Anna V Shneidman, Lawrence A David, Hans-Günther Döbereiner, Chris H Wiggins, Michael P Sheetz
Published 2008-01-01

Conserved anti-inflammatory effects and sensing of butyrate in zebrafish

by Pradeep Manuneedhi Cholan, Alvin Han, Brad R Woodie, Maxinne Watchon, Angela RM Kurz, Angela S Laird, Warwick J Britton, Lihua Ye, Zachary C Holmes, Jessica R McCann, Lawrence A David, John F Rawls, Stefan H Oehlers
Published 2020-11-01

Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut

by Aspen T Reese, Eugenia H Cho, Bruce Klitzman, Scott P Nichols, Natalie A Wisniewski, Max M Villa, Heather K Durand, Sharon Jiang, Firas S Midani, Sai N Nimmagadda, Thomas M O'Connell, Justin P Wright, Marc A Deshusses, Lawrence A David
Published 2018-06-01