ofw: An R Package to Select Continuous Variables for Multiclass Classification with a Stochastic Wrapper Method

by Kim-Anh Lê Cao, Patrick Chabrier
Published 2008-07-01

A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types

by Antoine Bodein, Olivier Chapleur, Arnaud Droit, Kim-Anh Lê Cao
Published 2019-11-01

mixOmics: An R package for 'omics feature selection and multiple data integration.

by Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao
Published 2017-11-01

A Linear Mixed Model Spline Framework for Analysing Time Course 'Omics' Data.

by Jasmin Straube, Alain-Dominique Gorse, PROOF Centre of Excellence Team, Bevan Emma Huang, Kim-Anh Lê Cao
Published 2015-01-01

Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease

by Geraldine Kong, Kim-Anh Lê Cao, Louise M. Judd, ShanShan Li, Thibault Renoir, Anthony J. Hannan
Published 2020-02-01

MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities.

by Kim-Anh Lê Cao, Mary-Ellen Costello, Vanessa Anne Lakis, François Bartolo, Xin-Yi Chua, Rémi Brazeilles, Pascale Rondeau
Published 2016-01-01

A simple, scalable approach to building a cross-platform transcriptome atlas.

by Paul W Angel, Nadia Rajab, Yidi Deng, Chris M Pacheco, Tyrone Chen, Kim-Anh Lê Cao, Jarny Choi, Christine A Wells
Published 2020-09-01

Epistatic interactions between killer immunoglobulin-like receptors and human leukocyte antigen ligands are associated with ankylosing spondylitis.

by Aimee L Hanson, International Genetics of Ankylosing Spondylitis Consortium, Damjan Vukcevic, Stephen Leslie, Jessica Harris, Kim-Anh Lê Cao, Tony J Kenna, Matthew A Brown
Published 2020-08-01

An integrated metagenomics and metabolomics approach implicates the microbiota-gut-brain axis in the pathogenesis of Huntington's disease

by Geraldine Kong, Susan Ellul, Vinod K. Narayana, Komal Kanojia, Harvey Tran Thai Ha, Shanshan Li, Thibault Renoir, Kim-Anh Lê Cao, Anthony J. Hannan
Published 2021-01-01

A molecular classification of human mesenchymal stromal cells

by Florian Rohart, Elizabeth A. Mason, Nicholas Matigian, Rowland Mosbergen, Othmar Korn, Tyrone Chen, Suzanne Butcher, Jatin Patel, Kerry Atkinson, Kiarash Khosrotehrani, Nicholas M. Fisk, Kim-Anh Lê Cao, Christine A. Wells
Published 2016-03-01

A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma Microbiomes

by David L. A. Wood, Nancy Lachner, Jean-Marie Tan, Stephanie Tang, Nicola Angel, Antonia Laino, Richard Linedale, Kim-Anh Lê Cao, Mark Morrison, Ian H. Frazer, H. Peter Soyer, Philip Hugenholtz
Published 2018-10-01

Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load

by Sandra Pavey, Alex Pinder, Winnie Fernando, Nicholas D’Arcy, Nicholas Matigian, Dubravka Skalamera, Kim‐Anh Lê Cao, Dorothy Loo‐Oey, Michelle M. Hill, Mitchell Stark, Michael Kimlin, Andrew Burgess, Nicole Cloonan, Richard A. Sturm, Brian Gabrielli
Published 2020-01-01

Glyco-centric lectin magnetic bead array (LeMBA) − proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals

by Alok K. Shah, Kim-Anh Lê Cao, Eunju Choi, David Chen, Benoît Gautier, Derek Nancarrow, David C. Whiteman, Peter R. Baker, Karl R. Clauser, Robert J. Chalkley, Nicholas A. Saunders, Andrew P. Barbour, Virendra Joshi, Michelle M. Hill
Published 2016-06-01

Uncoupled embryonic and extra-embryonic tissues compromise blastocyst development after somatic cell nuclear transfer.

by Séverine A Degrelle, Florence Jaffrezic, Evelyne Campion, Kim-Anh Lê Cao, Daniel Le Bourhis, Christophe Richard, Nathalie Rodde, Renaud Fleurot, Robin E Everts, Jérôme Lecardonnel, Yvan Heyman, Xavier Vignon, Xiangzhong Yang, Xiuchun C Tian, Harris A Lewin, Jean-Paul Renard, Isabelle Hue
Published 2012-01-01

Community-wide hackathons to identify central themes in single-cell multi-omics

by Kim-Anh Lê Cao, Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb, Atul Deshpande, Yuzhou Feng, Pratheepa Jeganathan, Melanie Loth, Chen Meng, Wancen Mu, Vera Pancaldi, Kris Sankaran, Amrit Singh, Joshua S. Sodicoff, Genevieve L. Stein-O’Brien, Ayshwarya Subramanian, Joshua D. Welch, Yue You, Ricard Argelaguet, Vincent J. Carey, Ruben Dries, Casey S. Greene, Susan Holmes, Michael I. Love, Matthew E. Ritchie, Guo-Cheng Yuan, Aedin C. Culhane, Elana Fertig
Published 2021-08-01

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

by Kim-Anh Lê Cao, Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb, Atul Deshpande, Yuzhou Feng, Pratheepa Jeganathan, Melanie Loth, Chen Meng, Wancen Mu, Vera Pancaldi, Kris Sankaran, Dario Righelli, Amrit Singh, Joshua S. Sodicoff, Genevieve L. Stein-O’Brien, Ayshwarya Subramanian, Joshua D. Welch, Yue You, Ricard Argelaguet, Vincent J. Carey, Ruben Dries, Casey S. Greene, Susan Holmes, Michael I. Love, Matthew E. Ritchie, Guo-Cheng Yuan, Aedin C. Culhane, Elana Fertig
Published 2021-08-01

Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort

by Casey P. Shannon, Casey P. Shannon, Travis M. Blimkie, Rym Ben-Othman, Rym Ben-Othman, Nicole Gladish, Nelly Amenyogbe, Nelly Amenyogbe, Sibyl Drissler, Rachel D. Edgar, Rachel D. Edgar, Queenie Chan, Mel Krajden, Leonard J. Foster, Michael S. Kobor, William W. Mohn, Ryan R. Brinkman, Kim-Anh Le Cao, Richard H. Scheuermann, Richard H. Scheuermann, Richard H. Scheuermann, Scott J. Tebbutt, Scott J. Tebbutt, Scott J. Tebbutt, Robert E.W. Hancock, Wayne C. Koff, Tobias R. Kollmann, Tobias R. Kollmann, Manish Sadarangani, Manish Sadarangani, Amy Huei-Yi Lee
Published 2020-11-01

Dynamic molecular changes during the first week of human life follow a robust developmental trajectory

by Amy H. Lee, Casey P. Shannon, Nelly Amenyogbe, Tue B. Bennike, Joann Diray-Arce, Olubukola T. Idoko, Erin E. Gill, Rym Ben-Othman, William S. Pomat, Simon D. van Haren, Kim-Anh Lê Cao, Momoudou Cox, Alansana Darboe, Reza Falsafi, Davide Ferrari, Daniel J. Harbeson, Daniel He, Cai Bing, Samuel J. Hinshaw, Jorjoh Ndure, Jainaba Njie-Jobe, Matthew A. Pettengill, Peter C. Richmond, Rebecca Ford, Gerard Saleu, Geraldine Masiria, John Paul Matlam, Wendy Kirarock, Elishia Roberts, Mehrnoush Malek, Guzmán Sanchez-Schmitz, Amrit Singh, Asimenia Angelidou, Kinga K. Smolen, The EPIC Consortium, Ryan R. Brinkman, Al Ozonoff, Robert E. W. Hancock, Anita H. J. van den Biggelaar, Hanno Steen, Scott J. Tebbutt, Beate Kampmann, Ofer Levy, Tobias R. Kollmann
Published 2019-03-01