CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data

by Judith Abécassis, Fabien Reyal, Jean-Philippe Vert
Published 2021-09-01

The 3D Organization of Chromatin Explains Evolutionary Fragile Genomic Regions

by Camille Berthelot, Matthieu Muffato, Judith Abecassis, Hugues Roest Crollius
Published 2015-03-01

Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data.

by Judith Abécassis, Anne-Sophie Hamy, Cécile Laurent, Benjamin Sadacca, Hélène Bonsang-Kitzis, Fabien Reyal, Jean-Philippe Vert
Published 2019-01-01

A Stromal Immune Module Correlated with the Response to Neoadjuvant Chemotherapy, Prognosis and Lymphocyte Infiltration in HER2-Positive Breast Carcinoma Is Inversely Correlated wi...

by Anne-Sophie Hamy, Hélène Bonsang-Kitzis, Marick Lae, Matahi Moarii, Benjamin Sadacca, Alice Pinheiro, Marion Galliot, Judith Abecassis, Cecile Laurent, Fabien Reyal
Published 2016-01-01

No Impact of Smoking Status on Breast Cancer Tumor Infiltrating Lymphocytes, Response to Neoadjuvant Chemotherapy and Prognosis

by Vanille Simon, Lucie Laot, Enora Laas, Sonia Rozette, Julien Guerin, Thomas Balezeau, Marion Nicolas, Jean-Yves Pierga, Florence Coussy, Marick Laé, Diane De Croze, Beatriz Grandal, Judith Abecassis, Elise Dumas, Florence Lerebours, Fabien Reyal, Anne-Sophie Hamy
Published 2020-10-01