Identification of functional differences in metabolic networks using comparative genomics and constraint-based models.

by Joshua J Hamilton, Jennifer L Reed
Published 2012-01-01

Thermodynamics and H2 Transfer in a Methanogenic, Syntrophic Community.

by Joshua J Hamilton, Montserrat Calixto Contreras, Jennifer L Reed
Published 2015-07-01

TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

by Robin R. Rohwer, Joshua J. Hamilton, Ryan J. Newton, Katherine D. McMahon
Published 2018-09-01

Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome

by Matthew J. Scarborough, Christopher E. Lawson, Joshua J. Hamilton, Timothy J. Donohue, Daniel R. Noguera
Published 2018-11-01

Genome-scale reconstruction of metabolic networks of Lactobacillus casei ATCC 334 and 12A.

by Elena Vinay-Lara, Joshua J Hamilton, Buffy Stahl, Jeff R Broadbent, Jennifer L Reed, James L Steele
Published 2014-01-01

Metabolic network analysis reveals microbial community interactions in anammox granules

by Christopher E. Lawson, Sha Wu, Ananda S. Bhattacharjee, Joshua J. Hamilton, Katherine D. McMahon, Ramesh Goel, Daniel R. Noguera
Published 2017-05-01

Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria

by Sarahi L. Garcia, Moritz Buck, Joshua J. Hamilton, Christian Wurzbacher, Hans-Peter Grossart, Katherine D. McMahon, Alexander Eiler
Published 2018-05-01

Design of synthetic human gut microbiome assembly and butyrate production

by Ryan L. Clark, Bryce M. Connors, David M. Stevenson, Susan E. Hromada, Joshua J. Hamilton, Daniel Amador-Noguez, Ophelia S. Venturelli
Published 2021-05-01

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

by Joshua J. Hamilton, Sarahi L. Garcia, Brittany S. Brown, Ben O. Oyserman, Francisco Moya-Flores, Stefan Bertilsson, Rex R. Malmstrom, Katrina T. Forest, Katherine D. McMahon, Katherine S. Pollard
Published 2017-08-01