Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities

by Andrew Whalen, Gregor Gorjanc, John M. Hickey
Published 2019-06-01

AlphaPart—R implementation of the method for partitioning genetic trends

by Jana Obšteter, Justin Holl, John M. Hickey, Gregor Gorjanc
Published 2021-03-01

A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals

by Roger Ros-Freixedes, Serap Gonen, Gregor Gorjanc, John M. Hickey
Published 2017-10-01

Assessment of the performance of hidden Markov models for imputation in animal breeding

by Andrew Whalen, Gregor Gorjanc, Roger Ros-Freixedes, John M. Hickey
Published 2018-09-01

Spatial modelling improves genetic evaluation in smallholder breeding programs

by Maria L. Selle, Ingelin Steinsland, Owen Powell, John M. Hickey, Gregor Gorjanc
Published 2020-11-01

The potential of shifting recombination hotspots to increase genetic gain in livestock breeding

by Serap Gonen, Mara Battagin, Susan E. Johnston, Gregor Gorjanc, John M. Hickey
Published 2017-07-01

A method for the allocation of sequencing resources in genotyped livestock populations

by Serap Gonen, Roger Ros-Freixedes, Mara Battagin, Gregor Gorjanc, John M. Hickey
Published 2017-05-01

Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling

by Roger Ros-Freixedes, Andrew Whalen, Gregor Gorjanc, Alan J. Mileham, John M. Hickey
Published 2020-04-01

Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees

by Andrew Whalen, Roger Ros-Freixedes, David L. Wilson, Gregor Gorjanc, John M. Hickey
Published 2018-12-01

Extending long-range phasing and haplotype library imputation algorithms to large and heterogeneous datasets

by Daniel Money, David Wilson, Janez Jenko, Andrew Whalen, Steve Thorn, Gregor Gorjanc, John M. Hickey
Published 2020-07-01

Atypical response regulator ChxR from Chlamydia trachomatis is structurally poised for DNA binding.

by Michael L Barta, John M Hickey, Asokan Anbanandam, Kevin Dyer, Michal Hammel, P Scott Hefty
Published 2014-01-01

Removal of alleles by genome editing (RAGE) against deleterious load

by Martin Johnsson, R. Chris Gaynor, Janez Jenko, Gregor Gorjanc, Dirk-Jan de Koning, John M. Hickey
Published 2019-04-01

Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing

by Roger Ros-Freixedes, Mara Battagin, Martin Johnsson, Gregor Gorjanc, Alan J. Mileham, Steve D. Rounsley, John M. Hickey
Published 2018-12-01

Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle

by Janez Jenko, Matthew C. McClure, Daragh Matthews, Jennifer McClure, Martin Johnsson, Gregor Gorjanc, John M. Hickey
Published 2019-03-01

A large-scale pedigree resource of wheat reveals evidence for adaptation and selection by breeders.

by Nick Fradgley, Keith A Gardner, James Cockram, James Elderfield, John M Hickey, Phil Howell, Robert Jackson, Ian J Mackay
Published 2019-02-01

Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations

by Roger Ros-Freixedes, Andrew Whalen, Ching-Yi Chen, Gregor Gorjanc, William O. Herring, Alan J. Mileham, John M. Hickey
Published 2020-04-01

Long-term comparison between index selection and optimal independent culling in plant breeding programs with genomic prediction.

by Lorena G Batista, Robert Chris Gaynor, Gabriel R A Margarido, Tim Byrne, Peter Amer, Gregor Gorjanc, John M Hickey
Published 2021-01-01

Sequence variation, evolutionary constraint, and selection at the CD163 gene in pigs

by Martin Johnsson, Roger Ros-Freixedes, Gregor Gorjanc, Matt A. Campbell, Sudhir Naswa, Kimberly Kelly, Jonathan Lightner, Steve Rounsley, John M. Hickey
Published 2018-12-01

Genetic variation in recombination rate in the pig

by Martin Johnsson, Andrew Whalen, Roger Ros-Freixedes, Gregor Gorjanc, Ching-Yi Chen, William O. Herring, Dirk-Jan de Koning, John M. Hickey
Published 2021-06-01

The Pfs230 N-terminal fragment, Pfs230D1+: expression and characterization of a potential malaria transmission-blocking vaccine candidate

by Shwu-Maan Lee, Yimin Wu, John M. Hickey, Kazutoyo Miura, Neal Whitaker, Sangeeta B. Joshi, David B. Volkin, C. Richter King, Jordan Plieskatt
Published 2019-11-01