A quick guide for developing effective bioinformatics programming skills.

by Joel T Dudley, Atul J Butte
Published 2009-12-01

Extreme evolutionary disparities seen in positive selection across seven complex diseases.

by Erik Corona, Joel T Dudley, Atul J Butte
Published 2010-08-01

PI3K inhibitors protect against glucocorticoid-induced skin atrophyResearch in context

by Shivani Agarwal, Salida Mirzoeva, Ben Readhead, Joel T. Dudley, Irina Budunova
Published 2019-03-01

Data-Driven Identification of Risk Factors of Patient Satisfaction at a Large Urban Academic Medical Center.

by Li Li, Nathan J Lee, Benjamin S Glicksberg, Brian D Radbill, Joel T Dudley
Published 2016-01-01

Identification of Cell Surface Targets through Meta-analysis of Microarray Data

by Henry Haeberle, Joel T. Dudley, Jonathan T.C. Liu, Atul J. Butte, Christopher H. Contag
Published 2012-07-01

Systematic Analysis of Environmental Chemicals That Dysregulate Critical Period Plasticity-Related Gene Expression Reveals Common Pathways That Mimic Immune Response to Pathogen

by Milo R. Smith, Priscilla Yevoo, Masato Sadahiro, Ben Readhead, Brian Kidd, Joel T. Dudley, Hirofumi Morishita
Published 2020-01-01

Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets.

by Silpa Suthram, Joel T Dudley, Annie P Chiang, Rong Chen, Trevor J Hastie, Atul J Butte
Published 2010-02-01

Integrative genomic meta-analysis reveals novel molecular insights into cystic fibrosis and ΔF508-CFTR rescue

by Rachel A. Hodos, Matthew D. Strub, Shyam Ramachandran, Li Li, Paul B. McCray, Joel T. Dudley
Published 2020-11-01

STORMSeq: an open-source, user-friendly pipeline for processing personal genomics data in the cloud.

by Konrad J Karczewski, Guy Haskin Fernald, Alicia R Martin, Michael Snyder, Nicholas P Tatonetti, Joel T Dudley
Published 2014-01-01

Identification of therapeutic targets from genetic association studies using hierarchical component analysis

by Hao-Chih Lee, Osamu Ichikawa, Benjamin S. Glicksberg, Aparna A. Divaraniya, Christine E. Becker, Pankaj Agarwal, Joel T. Dudley
Published 2020-06-01

Automated detection of off-label drug use.

by Kenneth Jung, Paea LePendu, William S Chen, Srinivasan V Iyer, Ben Readhead, Joel T Dudley, Nigam H Shah
Published 2014-01-01

Deep representation learning of electronic health records to unlock patient stratification at scale

by Isotta Landi, Benjamin S. Glicksberg, Hao-Chih Lee, Sarah Cherng, Giulia Landi, Matteo Danieletto, Joel T. Dudley, Cesare Furlanello, Riccardo Miotto
Published 2020-07-01

Integrative bioinformatics identifies postnatal lead (Pb) exposure disrupts developmental cortical plasticity

by Milo R. Smith, Priscilla Yevoo, Masato Sadahiro, Christine Austin, Chitra Amarasiriwardena, Mahmoud Awawda, Manish Arora, Joel T. Dudley, Hirofumi Morishita
Published 2018-11-01

Genome-wide analysis indicates association between heterozygote advantage and healthy aging in humans

by Ke Xu, Roman Kosoy, Khader Shameer, Sudhir Kumar, Li Liu, Ben Readhead, Gillian M. Belbin, Hao-Chih Lee, Rong Chen, Joel T. Dudley
Published 2019-07-01

Systems Genetic Analyses Highlight a TGFβ-FOXO3 Dependent Striatal Astrocyte Network Conserved across Species and Associated with Stress, Sleep, and Huntington's Disease.

by Joseph R Scarpa, Peng Jiang, Bojan Losic, Ben Readhead, Vance D Gao, Joel T Dudley, Martha H Vitaterna, Fred W Turek, Andrew Kasarskis
Published 2016-07-01

Integrative approach to pain genetics identifies pain sensitivity loci across diseases.

by David Ruau, Joel T Dudley, Rong Chen, Nicholas G Phillips, Gary E Swan, Laura C Lazzeroni, J David Clark, Atul J Butte, Martin S Angst
Published 2012-01-01

A transcriptomic model to predict increase in fibrous cap thickness in response to high-dose statin treatment: Validation by serial intracoronary OCT imagingResearch in context

by Kipp W. Johnson, Benjamin S. Glicksberg, Khader Shameer, Yuliya Vengrenyuk, Chayakrit Krittanawong, Adam J. Russak, Samin K. Sharma, Jagat N. Narula, Joel T. Dudley, Annapoorna S. Kini
Published 2019-06-01

Integrative chemogenomic analysis identifies small molecules that partially rescue ΔF508‐CFTR for cystic fibrosis

by Rachel A. Hodos, Matthew D. Strub, Shyam Ramachandran, Ella A. Meleshkevitch, Dmitri Y. Boudko, Robert J. Bridges, Joel T. Dudley, Paul B. McCray Jr.
Published 2021-05-01

Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits

by Wen Zhang, Georgios Voloudakis, Veera M. Rajagopal, Ben Readhead, Joel T. Dudley, Eric E. Schadt, Johan L. M. Björkegren, Yungil Kim, John F. Fullard, Gabriel E. Hoffman, Panos Roussos
Published 2019-08-01

Type 2 diabetes risk alleles demonstrate extreme directional differentiation among human populations, compared to other diseases.

by Rong Chen, Erik Corona, Martin Sikora, Joel T Dudley, Alex A Morgan, Andres Moreno-Estrada, Geoffrey B Nilsen, David Ruau, Stephen E Lincoln, Carlos D Bustamante, Atul J Butte
Published 2012-01-01