An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays [version 1; peer review: 2 approved]

by Clarence K. Mah, Jill P. Mesirov, Lukas Chavez
Published 2018-12-01

A genome-wide siRNA screen in mammalian cells for regulators of S6 phosphorylation.

by Angela Papageorgiou, Joseph Rapley, Jill P Mesirov, Pablo Tamayo, Joseph Avruch
Published 2015-01-01

Kataegis Expression Signature in Breast Cancer Is Associated with Late Onset, Better Prognosis, and Higher HER2 Levels

by Matteo D’Antonio, Pablo Tamayo, Jill P. Mesirov, Kelly A. Frazer
Published 2016-07-01

Compression of structured high-throughput sequencing data.

by Fabien Campagne, Kevin C Dorff, Nyasha Chambwe, James T Robinson, Jill P Mesirov
Published 2013-01-01

ISMB 2008 Toronto.

by Michal Linial, Jill P Mesirov, B J Morrison McKay, Burkhard Rost
Published 2008-06-01

Constellation Map: Downstream visualization and interpretation of gene set enrichment results [version 1; referees: 2 approved]

by Yan Tan, Felix Wu, Pablo Tamayo, W. Nicholas Haining, Jill P. Mesirov
Published 2015-06-01

Subclass mapping: identifying common subtypes in independent disease data sets.

by Yujin Hoshida, Jean-Philippe Brunet, Pablo Tamayo, Todd R Golub, Jill P Mesirov
Published 2007-01-01

Cytoscape: the network visualization tool for GenomeSpace workflows [v1; ref status: indexed, http://f1000r.es/3ph]

by Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael Smoot, Trey Ideker, Jill P. Mesirov
Published 2014-07-01

Cytoscape: the network visualization tool for GenomeSpace workflows [v2; ref status: indexed, http://f1000r.es/47f]

by Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael Smoot, Trey Ideker, Jill P. Mesirov
Published 2014-08-01

An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data [version 2; peer review: 2 approved]

by Clarence K. Mah, Alexander T. Wenzel, Edwin F. Juarez, Thorin Tabor, Michael M. Reich, Jill P. Mesirov
Published 2019-05-01

A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells

by Kevin Chen, Kivilcim Ozturk, Ted Liefeld, Michael Reich, Jill P. Mesirov, Hannah Carter, Stephanie I. Fraley
Published 2021-06-01

Transcriptional profiling of Plasmodium falciparum parasites from patients with severe malaria identifies distinct low vs. high parasitemic clusters.

by Danny A Milner, Nathalie Pochet, Malkie Krupka, Chris Williams, Karl Seydel, Terrie E Taylor, Yves Van de Peer, Aviv Regev, Dyann Wirth, Johanna P Daily, Jill P Mesirov
Published 2012-01-01

Control of Huntington’s Disease-Associated Phenotypes by the Striatum-Enriched Transcription Factor Foxp2

by Lea J. Hachigian, Vitor Carmona, Robert J. Fenster, Ruth Kulicke, Adrian Heilbut, Annie Sittler, Luís Pereira de Almeida, Jill P. Mesirov, Fan Gao, Eric D. Kolaczyk, Myriam Heiman
Published 2017-12-01

Model-based assessment of mammalian cell metabolic functionalities using omics data

by Anne Richelle, Benjamin P. Kellman, Alexander T. Wenzel, Austin W.T. Chiang, Tyler Reagan, Jahir M. Gutierrez, Chintan Joshi, Shangzhong Li, Joanne K. Liu, Helen Masson, Jooyong Lee, Zerong Li, Laurent Heirendt, Christophe Trefois, Edwin F. Juarez, Tyler Bath, David Borland, Jill P. Mesirov, Kimberly Robasky, Nathan E. Lewis
Published 2021-07-01

Integrated genomic analysis of the 8q24 amplification in endometrial cancers identifies ATAD2 as essential to MYC-dependent cancers.

by Maria B Raeder, Even Birkeland, Jone Trovik, Camilla Krakstad, Shyemaa Shehata, Steven Schumacher, Travis I Zack, Antje Krohn, Henrica Mj Werner, Susan E Moody, Elisabeth Wik, Ingunn M Stefansson, Frederik Holst, Anne M Oyan, Pablo Tamayo, Jill P Mesirov, Karl H Kalland, Lars A Akslen, Ronald Simon, Rameen Beroukhim, Helga B Salvesen
Published 2013-01-01

Using co-expression to redefine functional gene sets for gene set enrichment analysis

by Kodysh, Yuliya
Published 2008

ComBo : a visualization tool for comparative genomic data

by Yu, Tamara H. (Tamara Hui)
Published 2006