BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

by Jan Fostier
Published 2020-03-01

Dynamic partitioning of search patterns for approximate pattern matching using search schemes

by Luca Renders, Kathleen Marchal, Jan Fostier
Published 2021-07-01

Computational assessment of the feasibility of protonation-based protein sequencing.

by Giles Miclotte, Koen Martens, Jan Fostier
Published 2020-01-01

Accurate determination of node and arc multiplicities in de bruijn graphs using conditional random fields

by Aranka Steyaert, Pieter Audenaert, Jan Fostier
Published 2020-09-01

Computational assessment of the feasibility of protonation-based protein sequencing

by Giles Miclotte, Koen Martens, Jan Fostier, Wenfei Li
Published 2020-01-01

Preservation of Genetic Variation in a Breeding Population for Long-Term Genetic Gain

by David Vanavermaete, Jan Fostier, Steven Maenhout, Bernard De Baets
Published 2020-08-01

elPrep 4: A multithreaded framework for sequence analysis.

by Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Wilfried Verachtert
Published 2019-01-01

Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

by Mahdi Heydari, Giles Miclotte, Yves Van de Peer, Jan Fostier
Published 2019-06-01

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling.

by Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Joke Reumers
Published 2015-01-01

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.

by Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier
Published 2017-01-01

BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs

by Mahdi Heydari, Giles Miclotte, Yves Van de Peer, Jan Fostier
Published 2018-09-01

Multithreaded variant calling in elPrep 5.

by Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Roel Wuyts, Wilfried Verachtert
Published 2021-01-01

The index-based subgraph matching algorithm (ISMA): fast subgraph enumeration in large networks using optimized search trees.

by Sofie Demeyer, Tom Michoel, Jan Fostier, Pieter Audenaert, Mario Pickavet, Piet Demeester
Published 2013-01-01

Evaluation of the impact of Illumina error correction tools on de novo genome assembly

by Mahdi Heydari, Giles Miclotte, Piet Demeester, Yves Van de Peer, Jan Fostier
Published 2017-08-01

Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern.

by Nele Vandersickel, Masaya Watanabe, Qian Tao, Jan Fostier, Katja Zeppenfeld, Alexander V Panfilov
Published 2018-12-01

Pathway Relevance Ranking for Tumor Samples through Network-Based Data Integration.

by Lieven P C Verbeke, Jimmy Van den Eynden, Ana Carolina Fierro, Piet Demeester, Jan Fostier, Kathleen Marchal
Published 2015-01-01

Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples

by Louise de Schaetzen van Brienen, Maarten Larmuseau, Kim Van der Eecken, Frederic De Ryck, Pauline Robbe, Anna Schuh, Jan Fostier, Piet Ost, Kathleen Marchal
Published 2020-07-01