Bioinformatics for the human microbiome project

by Gevers, Dirk, Pop, Mihai, Schloss, Patrick D., Huttenhower, Curtis
Published 2013

Metagenomic biomarker discovery and explanation

by Segata, Nicola, Izard, Jacques, Waldron, Levi, Gevers, Dirk, Miropolsky, Larisa, Garrett, Wendy S., Huttenhower, Curtis
Published 2012

Microbial Co-occurrence Relationships in the Human Microbiome

by Faust, Karoline, Sathirapongsasuti, Jarupon, Izard, Jacques, Segata, Nicola, Gevers, Dirk, Raes, Jeroen, Huttenhower, Curtis
Published 2013

Host genetic variation and its microbiome interactions within the Human Microbiome Project

by Kolde, Raivo, Rahnavard, Gholamali, Vlamakis, Hera, Stevens, Christine, Huttenhower, Curtis, Franzosa, Eric A., Hall, Andrew Brantley, Daly, Mark J., Xavier, Ramnik Joseph
Published 2018

Genomics in 2011: challenges and opportunities

by Berger, Bonnie, Adams, David J., Harismendy, Olivier, Huttenhower, Curtis, Liu, X. Shirley, Myers, Chad L., Oshlack, Alicia, Rinn, John L., Walhout, Albertha J. M.
Published 2012

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

by Yassour, Moran, Vatanen, Tommi, Siljander, Heli, Hämäläinen, Anu-Maaria, Härkönen, Taina, Ryhänen, Samppa J., Franzosa, Eric A., Vlamakis, Hera, Huttenhower, Curtis, Gevers, Dirk, Knip, Mikael, Lander, Eric Steven, Xavier, Ramnik Joseph
Published 2018

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

by Abubucker, Sahar, Segata, Nicola, Goll, Johannes, Schubert, Alyxandria M., Izard, Jacques, Cantarel, Brandi L., Rodriguez-Mueller, Beltran, Zucker, Jeremy, Thiagarajan, Mathangi, Henrissat, Bernard, White, Owen, Kelley, Scott T., Methe, Barbara, Schloss, Patrick D., Gevers, Dirk, Mitreva, Makedonka, Huttenhower, Curtis
Published 2012

Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

by Yassour, Moran, Lim, Mi Young, Yun, Hyun Sun, Tickle, Timothy L., Sung, Joohon, Song, Yun-Mi, Lee, Kayoung, Franzosa, Eric A., Morgan, Xochitl C., Gevers, Dirk, Xavier, Ramnik J., Birren, Bruce W., Ko, GwangPyo, Huttenhower, Curtis, Lander, Eric Steven
Published 2018

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

by Yassour, Moran, Jason, Eeva, Hogstrom, Larson J., Arthur, Timothy D., Tripathi, Surya, Siljander, Heli, Selvenius, Jenni, Oikarinen, Sami, Hyöty, Heikki, Virtanen, Suvi M., Ilonen, Jorma, Ferretti, Pamela, Pasolli, Edoardo, Tett, Adrian, Asnicar, Francesco, Segata, Nicola, Vlamakis, Hera, Lander, Eric Steven, Huttenhower, Curtis, Knip, Mikael, Xavier, Ramnik J.
Published 2020

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

by Hall, Andrew Brantley, Yassour, Moran, Sauk, Jenny, Garner, Ashley, Jiang, Xiaofang, Arthur, Timothy, Vatanen, Tommi, Fornelos, Nadine, Wilson, Robin, Bertha, Madeline, Cohen, Melissa, Garber, John, Khalili, Hamed, Gevers, Dirk, Ananthakrishnan, Ashwin N., Kugathasan, Subra, Lander, Eric S., Vlamakis, Hera, Xavier, Ramnik J., Huttenhower, Curtis, Lagoudas, Georgia K, Blainey, Paul C
Published 2018

Meeting report for the 1st skin microbiota workshop, Boulder, CO October 15-16 2012

by Gilbert, Jack A., Ball, Madeleine, Blainey, Paul C., Blaser, Martin J., Bohannan, Brendan J. M., Bateman, Ashley, Bunge, John, Dominguez-Bello, Maria G., Epstein, Slava, Fierer, Noah, Gevers, Dirk, Grikscheit, Tracy, Hamdan, Leila J., Harvey, James, Huttenhower, Curtis, Kirkup, Benjamin, Kong, Heidi H., Lauber, Christian, Lemon, Katherine P., Lynch, Susan V., Martin, Lance, Mello, Charlene, Palma, Joseph, Parker, Roy, Petrosino, Joseph, Segre, Julia A., Vosshall, Leslie, Yi, Rui, Knight, Rob
Published 2015

Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine

by Geller, Leore T., Barzily-Rokni, Michal, Danino, Tal, Jonas, Oliver H., Shental, Noam, Nejman, Deborah, Gavert, Nancy, Zwang, Yaara, Cooper, Zachary A., Shee, Kevin, Thaiss, Christoph A., Reuben, Alexandre, Livny, Jonathan, Avraham, Roi, Frederick, Dennie T., Ligorio, Matteo, Chatman, Kelly, Johnston, Stephen E., Mosher, Carrie M., Brandis, Alexander, Fuks, Garold, Gurbatri, Candice, Gopalakrishnan, Vancheswaran, Kim, Michael, Hurd, Mark W., Katz, Matthew, Fleming, Jason, Maitra, Anirban, Smith, David A., Skalak, Matthew T., Bu, Jeffrey, Michaud, Monia, Trauger, Sunia A., Barshack, Iris, Golan, Talia, Sandbank, Judith, Flaherty, Keith T., Mandinova, Anna, Garrett, Wendy S., Thayer, Sarah P., Ferrone, Cristina R., Huttenhower, Curtis, Bhatia, Sangeeta N., Gevers, Dirk, Wargo, Jennifer A., Golub, Todd R., Straussman, Ravid
Published 2020

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

by Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J, Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E., Bittinger, Kyle, Brejnrod, Asker, Brislawn, Colin J., Brown, C. Titus, Callahan, Benjamin J., Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily K., Da Silva, Ricardo, Diener, Christian, Dorrestein, Pieter C., Douglas, Gavin M., Durall, Daniel M., Duvallet, Claire, Edwardson, Christian F., Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M., Gibbons, Sean M., Gibson, Deanna L., Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Hillmann, Benjamin, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin A., Janssen, Stefan, Jarmusch, Alan K., Jiang, Lingjing, Kaehler, Benjamin D., Kang, Kyo Bin, Keefe, Christopher R., Keim, Paul, Kelley, Scott T., Knights, Dan, Koester, Irina, Kosciolek, Tomasz, Kreps, Jorden, Langille, Morgan G. I., Lee, Joslynn, Ley, Ruth, Liu, Yong-Xin, Loftfield, Erikka, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan D., McDonald, Daniel, McIver, Lauren J., Melnik, Alexey V., Metcalf, Jessica L., Morgan, Sydney C., Morton, Jamie T., Naimey, Ahmad Turan, Navas-Molina, Jose A., Nothias, Louis Felix, Orchanian, Stephanie B., Pearson, Talima, Peoples, Samuel L., Petras, Daniel, Preuss, Mary Lai, Pruesse, Elmar, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S., Rosenthal, Patrick, Segata, Nicola, Shaffer, Michael, Shiffer, Arron, Sinha, Rashmi, Song, Se Jin, Spear, John R., Swafford, Austin D., Thompson, Luke R., Torres, Pedro J., Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J., Ul-Hasan, Sabah, van der Hooft, Justin J. J., Vargas, Fernando, Vázquez-Baeza, Yoshiki, Vogtmann, Emily, von Hippel, Max, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C., Williamson, Charles H. D., Willis, Amy D., Xu, Zhenjiang Zech, Zaneveld, Jesse R., Zhang, Yilong, Zhu, Qiyun, Knight, Rob, Caporaso, J. Gregory
Published 2020