barCoder: a tool to generate unique, orthogonal genetic tags for qPCR detection

by Casey B. Bernhards, Matthew W. Lux, Sarah E. Katoski, Tyler D. P. Goralski, Alvin T. Liem, Henry S. Gibbons
Published 2021-03-01

Characterization of pPCP1 Plasmids in Yersinia pestis Strains Isolated from the Former Soviet Union

by Chythanya Rajanna, Tamara Revazishvili, Mohammed H. Rashid, Svetlana Chubinidze, Lela Bakanidze, Shota Tsanava, Paata Imnadze, Kimberly A. Bishop-Lilly, Shanmuga Sozhamannan, Henry S. Gibbons, J. Glenn Morris, Alexander Sulakvelidze
Published 2010-01-01

Tracking a serial killer: Integrating phylogenetic relationships, epidemiology, and geography for two invasive meningococcal disease outbreaks.

by Ifeoma Ezeoke, Madeline R Galac, Ying Lin, Alvin T Liem, Pierce A Roth, Andrew Kilianski, Henry S Gibbons, Danielle Bloch, John Kornblum, Paula Del Rosso, Daniel A Janies, Don Weiss
Published 2018-01-01

Pathoadaptive mutations in Salmonella enterica isolated after serial passage in mice.

by Sanna Koskiniemi, Henry S Gibbons, Linus Sandegren, Naeem Anwar, Gary Ouellette, Stacey Broomall, Mark Karavis, Paul McGregor, Alvin Liem, Ed Fochler, Lauren McNew, Carolyn Nicole Rosenzweig, Mikael Rhen, Evan W Skowronski, Dan I Andersson
Published 2013-01-01

Mutations in global regulators lead to metabolic selection during adaptation to complex environments.

by Gerda Saxer, Michael D Krepps, Eric D Merkley, Charles Ansong, Brooke L Deatherage Kaiser, Marie-Thérèse Valovska, Nikola Ristic, Ping T Yeh, Vittal P Prakash, Owen P Leiser, Luay Nakhleh, Henry S Gibbons, Helen W Kreuzer, Yousif Shamoo
Published 2014-12-01

Comparative genomics of 2009 seasonal plague (Yersinia pestis) in New Mexico.

by Henry S Gibbons, Michael D Krepps, Gary Ouellette, Mark Karavis, Lisa Onischuk, Pascale Leonard, Stacey Broomall, Todd Sickler, Janet L Betters, Paul McGregor, Greg Donarum, Alvin Liem, Ed Fochler, Lauren McNew, C Nicole Rosenzweig, Evan Skowronski
Published 2012-01-01

Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates.

by Senanu M Spring-Pearson, Joshua K Stone, Adina Doyle, Christopher J Allender, Richard T Okinaka, Mark Mayo, Stacey M Broomall, Jessica M Hill, Mark A Karavis, Kyle S Hubbard, Joseph M Insalaco, Lauren A McNew, C Nicole Rosenzweig, Henry S Gibbons, Bart J Currie, David M Wagner, Paul Keim, Apichai Tuanyok
Published 2015-01-01

Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant.

by Henry S Gibbons, Stacey M Broomall, Lauren A McNew, Hajnalka Daligault, Carol Chapman, David Bruce, Mark Karavis, Michael Krepps, Paul A McGregor, Charles Hong, Kyong H Park, Arya Akmal, Andrew Feldman, Jeffrey S Lin, Wenling E Chang, Brandon W Higgs, Plamen Demirev, John Lindquist, Alvin Liem, Ed Fochler, Timothy D Read, Roxanne Tapia, Shannon Johnson, Kimberly A Bishop-Lilly, Chris Detter, Cliff Han, Shanmuga Sozhamannan, C Nicole Rosenzweig, Evan W Skowronski
Published 2011-03-01

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.

by Sanaa A Ahmed, Joy Awosika, Carson Baldwin, Kimberly A Bishop-Lilly, Biswajit Biswas, Stacey Broomall, Patrick S G Chain, Olga Chertkov, Otar Chokoshvili, Susan Coyne, Karen Davenport, J Chris Detter, William Dorman, Tracy H Erkkila, Jason P Folster, Kenneth G Frey, Matroner George, Cheryl Gleasner, Matthew Henry, Karen K Hill, Kyle Hubbard, Joseph Insalaco, Shannon Johnson, Aaron Kitzmiller, Michael Krepps, Chien-Chi Lo, Truong Luu, Lauren A McNew, Timothy Minogue, Christine A Munk, Brian Osborne, Mohit Patel, Krista G Reitenga, C Nicole Rosenzweig, April Shea, Xiaohong Shen, Nancy Strockbine, Cheryl Tarr, Hazuki Teshima, Eric van Gieson, Kathleen Verratti, Mark Wolcott, Gary Xie, Shanmuga Sozhamannan, Henry S Gibbons, Threat Characterization Consortium
Published 2012-01-01