From beat tracking to beat expectation: Cognitive-based beat tracking for capturing pulse clarity through time

by Martin Alejandro Miguel, Mariano Sigman, Diego Fernandez Slezak, Gustavo Stolovitzky
Published 2020-01-01

When the optimal is not the best: parameter estimation in complex biological models.

by Diego Fernández Slezak, Cecilia Suárez, Guillermo A Cecchi, Guillermo Marshall, Gustavo Stolovitzky
Published 2010-01-01

Noise-driven causal inference in biomolecular networks.

by Robert J Prill, Robert Vogel, Guillermo A Cecchi, Grégoire Altan-Bonnet, Gustavo Stolovitzky
Published 2015-01-01

Mitochondrial origins of fractional control in regulated cell death

by Luís C. Santos, Robert Vogel, Jerry E. Chipuk, Marc R. Birtwistle, Gustavo Stolovitzky, Pablo Meyer
Published 2019-03-01

The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies

by Jennifer EL Diaz, Mehmet Eren Ahsen, Thomas Schaffter, Xintong Chen, Ronald B Realubit, Charles Karan, Andrea Califano, Bojan Losic, Gustavo Stolovitzky
Published 2020-09-01

Correction: Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

by Robert J. Prill, Daniel Marbach, Julio Saez-Rodriguez, Peter K. Sorger, Leonidas G. Alexopoulos, Xiaowei Xue, Neil D. Clarke, Gregoire Altan-Bonnet, Gustavo Stolovitzky
Published 2010-01-01

Correction: Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges.

by Robert J. Prill, Daniel Marbach, Julio Saez-Rodriguez, Peter K. Sorger, Leonidas G. Alexopoulos, Xiaowei Xue, Neil D. Clarke, Gregoire Altan-Bonnet, Gustavo Stolovitzky
Published 2010-01-01

Towards a rigorous assessment of systems biology models: the DREAM3 challenges.

by Robert J Prill, Daniel Marbach, Julio Saez-Rodriguez, Peter K Sorger, Leonidas G Alexopoulos, Xiaowei Xue, Neil D Clarke, Gregoire Altan-Bonnet, Gustavo Stolovitzky
Published 2010-02-01

Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges

by Kyle Ellrott, Alex Buchanan, Allison Creason, Michael Mason, Thomas Schaffter, Bruce Hoff, James Eddy, John M. Chilton, Thomas Yu, Joshua M. Stuart, Julio Saez-Rodriguez, Gustavo Stolovitzky, Paul C. Boutros, Justin Guinney
Published 2019-09-01

On Crowd-verification of Biological Networks

by Sam Ansari, Jean Binder, Stephanie Boue, Anselmo Di Fabio, William Hayes, Julia Hoeng, Anita Iskandar, Robin Kleiman, Raquel Norel, Bruce O'neel, Manuel C. Peitsch, Carine Poussin, Dexter Pratt, Kahn Rhrissorrakrai, Walter K. Schlage, Gustavo Stolovitzky, Marja Talikka
Published 2013-01-01

Wafer-scale integration of sacrificial nanofluidic chips for detecting and manipulating single DNA molecules

by Chao Wang, Sung-Wook Nam, John M. Cotte, Christopher V. Jahnes, Evan G. Colgan, Robert L. Bruce, Markus Brink, Michael F. Lofaro, Jyotica V. Patel, Lynne M. Gignac, Eric A. Joseph, Satyavolu Papa Rao, Gustavo Stolovitzky, Stanislav Polonsky, Qinghuang Lin
Published 2017-01-01

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth

by Adi L. Tarca, Bálint Ármin Pataki, Roberto Romero, Marina Sirota, Yuanfang Guan, Rintu Kutum, Nardhy Gomez-Lopez, Bogdan Done, Gaurav Bhatti, Thomas Yu, Gaia Andreoletti, Tinnakorn Chaiworapongsa, Sonia S. Hassan, Chaur-Dong Hsu, Nima Aghaeepour, Gustavo Stolovitzky, Istvan Csabai, James C. Costello
Published 2021-06-01

On Crowd-verification of Biological Networks

by Carine Poussin, Dexter Pratt, Marja Talikka, Kahn Rhrissorrakrai, Walter K. Schlage, Gustavo Stolovitzky, Stephanie Boue, Anselmo Di Fabio, William Hayes, Julia Hoeng, Anita Iskandar, Robin Kleiman, Raquel Norel, Bruce O'Neel, Manuel C. Peitsch, The sbv IMPROVER project team (in alphabetical order): Sam Ansari, Jean Binder
Published 2013-10-01

Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data

by Subhrajit Roy, Isabell Kiral, Mahtab Mirmomeni, Todd Mummert, Alan Braz, Jason Tsay, Jianbin Tang, Umar Asif, Thomas Schaffter, Mehmet Eren Ahsen, Toshiya Iwamori, Hiroki Yanagisawa, Hasan Poonawala, Piyush Madan, Yong Qin, Joseph Picone, Iyad Obeid, Bruno De Assis Marques, Stefan Maetschke, Rania Khalaf, Michal Rosen-Zvi, Gustavo Stolovitzky, Stefan Harrer
Published 2021-04-01

DREAMTools: a Python package for scoring collaborative challenges [version 2; referees: 1 approved, 2 approved with reservations]

by Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Alberto de la Fuente, Mehmet Gönen, Steven M. Hill, Bruce Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
Published 2016-04-01

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis.

by David P Noren, Byron L Long, Raquel Norel, Kahn Rrhissorrakrai, Kenneth Hess, Chenyue Wendy Hu, Alex J Bisberg, Andre Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M Chen, Honglei Xie, Geoffrey A M Hunter, Paul C Boutros, Oleg Stepanov, DREAM 9 AML-OPC Consortium, Thea Norman, Stephen H Friend, Gustavo Stolovitzky, Steven Kornblau, Amina A Qutub
Published 2016-06-01

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

by Anna Y. Lee, Adam D. Ewing, Kyle Ellrott, Yin Hu, Kathleen E. Houlahan, J. Christopher Bare, Shadrielle Melijah G. Espiritu, Vincent Huang, Kristen Dang, Zechen Chong, Cristian Caloian, Takafumi N. Yamaguchi, ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, Michael R. Kellen, Ken Chen, Thea C. Norman, Stephen H. Friend, Justin Guinney, Gustavo Stolovitzky, David Haussler, Adam A. Margolin, Joshua M. Stuart, Paul C. Boutros
Published 2018-11-01

Crowdsourced mapping of unexplored target space of kinase inhibitors

by Anna Cichońska, Balaguru Ravikumar, Robert J. Allaway, Fangping Wan, Sungjoon Park, Olexandr Isayev, Shuya Li, Michael Mason, Andrew Lamb, Ziaurrehman Tanoli, Minji Jeon, Sunkyu Kim, Mariya Popova, Stephen Capuzzi, Jianyang Zeng, Kristen Dang, Gregory Koytiger, Jaewoo Kang, Carrow I. Wells, Timothy M. Willson, The IDG-DREAM Drug-Kinase Binding Prediction Challenge Consortium, Tudor I. Oprea, Avner Schlessinger, David H. Drewry, Gustavo Stolovitzky, Krister Wennerberg, Justin Guinney, Tero Aittokallio
Published 2021-06-01

Intratumoral heterogeneity and clonal evolution in liver cancer

by Bojan Losic, Amanda J. Craig, Carlos Villacorta-Martin, Sebastiao N. Martins-Filho, Nicholas Akers, Xintong Chen, Mehmet E. Ahsen, Johann von Felden, Ismail Labgaa, Delia DʹAvola, Kimaada Allette, Sergio A. Lira, Glaucia C. Furtado, Teresa Garcia-Lezana, Paula Restrepo, Ashley Stueck, Stephen C. Ward, Maria I. Fiel, Spiros P. Hiotis, Ganesh Gunasekaran, Daniela Sia, Eric E. Schadt, Robert Sebra, Myron Schwartz, Josep M. Llovet, Swan Thung, Gustavo Stolovitzky, Augusto Villanueva
Published 2020-01-01

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

by Michael P. Menden, Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan, Thomas Yu, Jaewoo Kang, Minji Jeon, Russ Wolfinger, Tin Nguyen, Mikhail Zaslavskiy, AstraZeneca-Sanger Drug Combination DREAM Consortium, In Sock Jang, Zara Ghazoui, Mehmet Eren Ahsen, Robert Vogel, Elias Chaibub Neto, Thea Norman, Eric K. Y. Tang, Mathew J. Garnett, Giovanni Y. Di Veroli, Stephen Fawell, Gustavo Stolovitzky, Justin Guinney, Jonathan R. Dry, Julio Saez-Rodriguez
Published 2019-06-01