Characterization of the salivary microbiome in patients with pancreatic cancer

by Torres, Pedro J., Fletcher, Erin M., Gibbons, Sean M., Bouvet, Michael, Doran, Kelly S., Kelley, Scott T., Gibbons, Sean
Published 2016

Correcting for batch effects in case-control microbiome studies

by Gibbons, Sean Michael, Duvallet, Claire, Alm, Eric J
Published 2018

Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment

by Bhanvadia, Amit, Zhu, Roger, Amarnani, Abhimanyu, Gibbons, Sean M., Martello, Laura A., Pakpour, Sepideh, Gibbons, Sean Michael, Gurry, Thomas Jerome, Alm, Eric J
Published 2018

Two dynamic regimes in the human gut microbiome

by Gibbons, Sean Michael, Kearney, Sean M, Smillie, Chris S, Alm, Eric J
Published 2017

Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal

by Kearney, Sean M, Gibbons, Sean Michael, Erdman, Susan E, Alm, Eric J
Published 2018

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

by Irizarry, Rafael A., Duvallet, Claire, Gibbons, Sean Michael, Gurry, Thomas Jerome, Alm, Eric J
Published 2018

Rapid response of arbuscular mycorrhizal fungal communities to short-term fertilization in an alpine grassland on the Qinghai-Tibet Plateau

by Xiang, Xingjia, He, Jin-Sheng, Wang, Chao, He, Dan, Li, Qian, Ni, Yingying, Chu, Haiyan, Gibbons, Sean Michael
Published 2018

Adaptive Evolution within Gut Microbiomes of Healthy People

by Zhao, Shijie, Lieberman, Tami, Poyet, Mathilde, Kauffman, Kathryn, Gibbons, Sean M., Groussin, Mathieu, Xavier, Ramnik J., Alm, Eric J
Published 2020

Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota

by Bullock, Kevin, Allegretti, Jessica R., Clish, Clary B., Kearney, Sean M, Gibbons, Sean Michael, Poyet, Mathilde, Gurry, Thomas Jerome, Alm, Eric J
Published 2018

Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort

by Ananthakrishnan, Ashwin, Kassam, Zain, Gurry, Thomas Jerome, Gibbons, Sean Michael, Nguyen, Le Thanh Tu, Kearney, Sean M, Jiang, Xiaofang, Duvallet, Claire, Alm, Eric J
Published 2019

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

by Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J, Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E., Bittinger, Kyle, Brejnrod, Asker, Brislawn, Colin J., Brown, C. Titus, Callahan, Benjamin J., Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily K., Da Silva, Ricardo, Diener, Christian, Dorrestein, Pieter C., Douglas, Gavin M., Durall, Daniel M., Duvallet, Claire, Edwardson, Christian F., Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M., Gibbons, Sean M., Gibson, Deanna L., Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Hillmann, Benjamin, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin A., Janssen, Stefan, Jarmusch, Alan K., Jiang, Lingjing, Kaehler, Benjamin D., Kang, Kyo Bin, Keefe, Christopher R., Keim, Paul, Kelley, Scott T., Knights, Dan, Koester, Irina, Kosciolek, Tomasz, Kreps, Jorden, Langille, Morgan G. I., Lee, Joslynn, Ley, Ruth, Liu, Yong-Xin, Loftfield, Erikka, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan D., McDonald, Daniel, McIver, Lauren J., Melnik, Alexey V., Metcalf, Jessica L., Morgan, Sydney C., Morton, Jamie T., Naimey, Ahmad Turan, Navas-Molina, Jose A., Nothias, Louis Felix, Orchanian, Stephanie B., Pearson, Talima, Peoples, Samuel L., Petras, Daniel, Preuss, Mary Lai, Pruesse, Elmar, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S., Rosenthal, Patrick, Segata, Nicola, Shaffer, Michael, Shiffer, Arron, Sinha, Rashmi, Song, Se Jin, Spear, John R., Swafford, Austin D., Thompson, Luke R., Torres, Pedro J., Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J., Ul-Hasan, Sabah, van der Hooft, Justin J. J., Vargas, Fernando, Vázquez-Baeza, Yoshiki, Vogtmann, Emily, von Hippel, Max, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C., Williamson, Charles H. D., Willis, Amy D., Xu, Zhenjiang Zech, Zaneveld, Jesse R., Zhang, Yilong, Zhu, Qiyun, Knight, Rob, Caporaso, J. Gregory
Published 2020