Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data

by John W. Hickey, John W. Hickey, Yuqi Tan, Yuqi Tan, Garry P. Nolan, Garry P. Nolan, Yury Goltsev, Yury Goltsev
Published 2021-08-01

COP9 signalosome component JAB1/CSN5 is necessary for T cell signaling through LFA-1 and HIV-1 replication.

by Shigemi M Kinoshita, Peter O Krutzik, Garry P Nolan
Published 2012-01-01

Snapin, positive regulator of stimulation- induced Ca²⁺ release through RyR, is necessary for HIV-1 replication in T cells.

by Shigemi M Kinoshita, Amane Kogure, Shizuka Taguchi, Garry P Nolan
Published 2013-01-01

Stage dependent aberrant regulation of cytokine-STAT signaling in murine systemic lupus erythematosus.

by Matthew B Hale, Peter O Krutzik, Shamsher S Samra, Janelle M Crane, Garry P Nolan
Published 2009-08-01

Association of reactive oxygen species-mediated signal transduction with in vitro apoptosis sensitivity in chronic lymphocytic leukemia B cells.

by Adam L Palazzo, Erik Evensen, Ying-Wen Huang, Alessandra Cesano, Garry P Nolan, Wendy J Fantl
Published 2011-01-01

Single-Cell Mass Cytometry Analysis of Human Tonsil T Cell Remodeling by Varicella Zoster Virus

by Nandini Sen, Gourab Mukherjee, Adrish Sen, Sean C. Bendall, Phillip Sung, Garry P. Nolan, Ann M. Arvin
Published 2014-07-01

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks.

by Ye Henry Li, Dangna Li, Nikolay Samusik, Xiaowei Wang, Leying Guan, Garry P Nolan, Wing Hung Wong
Published 2017-12-01

Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection

by Erika Bongen, Haley Lucian, Avani Khatri, Gabriela K. Fragiadakis, Zachary B. Bjornson, Garry P. Nolan, Paul J. Utz, Purvesh Khatri
Published 2019-11-01

Distinct patterns of DNA damage response and apoptosis correlate with Jak/Stat and PI3kinase response profiles in human acute myelogenous leukemia.

by David B Rosen, Santosh Putta, Todd Covey, Ying-Wen Huang, Garry P Nolan, Alessandra Cesano, Mark D Minden, Wendy J Fantl
Published 2010-08-01

Performance of BioFire array or QuickVue influenza A + B test versus a validation qPCR assay for detection of influenza A during a volunteer A/California/2009/H1N1 challenge study...

by David R. McIlwain, Han Chen, Maria Apkarian, Melton Affrime, Bonnie Bock, Kenneth Kim, Nilanjan Mukherjee, Garry P. Nolan, Monica M. McNeal
Published 2021-02-01

Highly Multiplexed Phenotyping of Immunoregulatory Proteins in the Tumor Microenvironment by CODEX Tissue Imaging

by Darci Phillips, Darci Phillips, Christian M. Schürch, Christian M. Schürch, Michael S. Khodadoust, Youn H. Kim, Youn H. Kim, Garry P. Nolan, Sizun Jiang
Published 2021-05-01

Correction to: Performance of BioFire array or QuickVue influenza A + B test versus a validation qPCR assay for detection of influenza A during a volunteer A/California/2009/H1N1 c...

by David R. McIlwain, Han Chen, Maria Apkarian, Melton Affrime, Bonnie Bock, Kenneth Kim, Nilanjan Mukherjee, Garry P. Nolan, Monica M. McNeal
Published 2021-03-01

Functional comparison of PBMCs isolated by Cell Preparation Tubes (CPT) vs. Lymphoprep Tubes

by Han Chen, Christian M. Schürch, Kevin Noble, Kenneth Kim, Peter O. Krutzik, Erika O’Donnell, Jason Vander Tuig, Garry P. Nolan, David R. McIlwain
Published 2020-03-01

Nanoscopic subcellular imaging enabled by ion beam tomography

by Ahmet F. Coskun, Guojun Han, Shambavi Ganesh, Shih-Yu Chen, Xavier Rovira Clavé, Stefan Harmsen, Sizun Jiang, Christian M. Schürch, Yunhao Bai, Chuck Hitzman, Garry P. Nolan
Published 2021-02-01

A novel method for detection of phosphorylation in single cells by surface enhanced Raman scattering (SERS) using composite organic-inorganic nanoparticles (COINs).

by Catherine M Shachaf, Sailaja V Elchuri, Ai Leen Koh, Jing Zhu, Lienchi N Nguyen, Dennis J Mitchell, Jingwu Zhang, Kenneth B Swartz, Lei Sun, Selena Chan, Robert Sinclair, Garry P Nolan
Published 2009-01-01

Joint modeling and registration of cell populations in cohorts of high-dimensional flow cytometric data.

by Saumyadipta Pyne, Sharon X Lee, Kui Wang, Jonathan Irish, Pablo Tamayo, Marc-Danie Nazaire, Tarn Duong, Shu-Kay Ng, David Hafler, Ronald Levy, Garry P Nolan, Jill Mesirov, Geoffrey J McLachlan
Published 2014-01-01

Reversibility of Defective Hematopoiesis Caused by Telomere Shortening in Telomerase Knockout Mice.

by Aparna Raval, Gregory K Behbehani, Le Xuan Truong Nguyen, Daniel Thomas, Brenda Kusler, Alina Garbuzov, John Ramunas, Colin Holbrook, Christopher Y Park, Helen Blau, Garry P Nolan, Steven E Artandi, Beverly S Mitchell
Published 2015-01-01

Subcellular localization of biomolecules and drug distribution by high-definition ion beam imaging

by Xavier Rovira-Clavé, Sizun Jiang, Yunhao Bai, Bokai Zhu, Graham Barlow, Salil Bhate, Ahmet F. Coskun, Guojun Han, Chin-Min Kimmy Ho, Chuck Hitzman, Shih-Yu Chen, Felice-Alessio Bava, Garry P. Nolan
Published 2021-07-01

Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis

by Jared M. Churko, Priyanka Garg, Barbara Treutlein, Meenakshi Venkatasubramanian, Haodi Wu, Jaecheol Lee, Quinton N. Wessells, Shih-Yu Chen, Wen-Yi Chen, Kashish Chetal, Gary Mantalas, Norma Neff, Eric Jabart, Arun Sharma, Garry P. Nolan, Nathan Salomonis, Joseph C. Wu
Published 2018-11-01

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images

by Yunhao Bai, Yunhao Bai, Bokai Zhu, Bokai Zhu, Xavier Rovira-Clave, Han Chen, Maxim Markovic, Chi Ngai Chan, Tung-Hung Su, Tung-Hung Su, David R. McIlwain, Jacob D. Estes, Leeat Keren, Leeat Keren, Garry P. Nolan, Sizun Jiang, Sizun Jiang
Published 2021-07-01