Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data.

by Finlay Campbell, Anne Cori, Neil Ferguson, Thibaut Jombart
Published 2019-03-01

When are pathogen genome sequences informative of transmission events?

by Finlay Campbell, Camilla Strang, Neil Ferguson, Anne Cori, Thibaut Jombart
Published 2018-02-01

epicontacts: Handling, visualisation and analysis of epidemiological contacts [version 2; peer review: 2 approved, 1 approved with reservations]

by VP Nagraj, Nistara Randhawa, Finlay Campbell, Thomas Crellen, Bertrand Sudre, Thibaut Jombart
Published 2018-10-01

outbreaker2: a modular platform for outbreak reconstruction

by Finlay Campbell, Xavier Didelot, Rich Fitzjohn, Neil Ferguson, Anne Cori, Thibaut Jombart
Published 2018-10-01