Generating real-world evidence from unstructured clinical notes to examine clinical utility of genetic tests: use case in BRCAness

by Yiqing Zhao, Saravut J. Weroha, Ellen L. Goode, Hongfang Liu, Chen Wang
Published 2021-01-01

Testing Mediation Effects in High-Dimensional Epigenetic Studies

by Yuzhao Gao, Haitao Yang, Ruiling Fang, Yanbo Zhang, Ellen L. Goode, Yuehua Cui
Published 2019-11-01

Assessment of data transformations for model-based clustering of RNA-Seq data.

by Janelle R Noel-MacDonnell, Joseph Usset, Ellen L Goode, Brooke L Fridley
Published 2018-01-01

Subject level clustering using a negative binomial model for small transcriptomic studies

by Qian Li, Janelle R. Noel-MacDonnell, Devin C. Koestler, Ellen L. Goode, Brooke L. Fridley
Published 2018-12-01

A latent model for prioritization of SNPs for functional studies.

by Brooke L Fridley, Ed Iversen, Ya-Yu Tsai, Gregory D Jenkins, Ellen L Goode, Thomas A Sellers
Published 2011-01-01

Genome-wide study of response to platinum, taxane, and combination therapy in ovarian cancer: in vitro phenotypes, inherited variation, and disease recurrence

by Brooke L Fridley, Taraswi Mitra Ghosh, Alice eWang, Rama eRaghavan, Junqiang eDai, Ellen L Goode, Jatinder K Lamba
Published 2016-03-01

Frequent POLE-driven hypermutation in ovarian endometrioid cancer revealed by mutational signatures in RNA sequencing

by Jaime I. Davila, Pritha Chanana, Vivekananda Sarangi, Zachary C. Fogarty, S. John Weroha, Ruifeng Guo, Ellen L. Goode, Yajue Huang, Chen Wang
Published 2021-06-01

Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes

by Gregory P. Way, James Rudd, Chen Wang, Habib Hamidi, Brooke L. Fridley, Gottfried E. Konecny, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty
Published 2016-12-01

The ratios of CD8+ T cells to CD4+CD25+ FOXP3+ and FOXP3- T cells correlate with poor clinical outcome in human serous ovarian cancer.

by Claudia C Preston, Matthew J Maurer, Ann L Oberg, Daniel W Visscher, Kimberly R Kalli, Lynn C Hartmann, Ellen L Goode, Keith L Knutson
Published 2013-01-01

Functional folate receptor alpha is elevated in the blood of ovarian cancer patients.

by Eati Basal, Guiti Z Eghbali-Fatourechi, Kimberly R Kalli, Lynn C Hartmann, Karin M Goodman, Ellen L Goode, Barton A Kamen, Philip S Low, Keith L Knutson
Published 2009-07-01

Genomic Analysis Using Regularized Regression in High-Grade Serous Ovarian Cancer

by Yanina Natanzon, Madalene Earp, Julie M Cunningham, Kimberly R Kalli, Chen Wang, Sebastian M Armasu, Melissa C Larson, David DL Bowtell, Dale W Garsed, Brooke L Fridley, Stacey J Winham, Ellen L Goode
Published 2018-01-01

European American stratification in ovarian cancer case control data: the utility of genome-wide data for inferring ancestry.

by Paola Raska, Edwin Iversen, Ann Chen, Zhihua Chen, Brooke L Fridley, Jennifer Permuth-Wey, Ya-Yu Tsai, Robert A Vierkant, Ellen L Goode, Harvey Risch, Joellen M Schildkraut, Thomas A Sellers, Jill Barnholtz-Sloan
Published 2012-01-01

Intra-Gene DNA Methylation Variability Is a Clinically Independent Prognostic Marker in Women's Cancers.

by Thomas E Bartlett, Allison Jones, Ellen L Goode, Brooke L Fridley, Julie M Cunningham, Els M J J Berns, Elisabeth Wik, Helga B Salvesen, Ben Davidson, Claes G Trope, Sandrina Lambrechts, Ignace Vergote, Martin Widschwendter
Published 2015-01-01

Association between common germline genetic variation in 94 candidate genes or regions and risks of invasive epithelial ovarian cancer.

by Lydia Quaye, Jonathan Tyrer, Susan J Ramus, Honglin Song, Eva Wozniak, Richard A DiCioccio, Valerie McGuire, Estrid Høgdall, Claus Høgdall, Jan Blaakaer, Ellen L Goode, Joellen M Schildkraut, Douglas F Easton, Susanne Krüger-Kjaer, Alice S Whittemore, Simon A Gayther, Paul D P Pharoah
Published 2009-06-01

Regular multivitamin supplement use, single nucleotide polymorphisms in ATIC, SHMT2 and SLC46A1 and risk of ovarian carcinoma

by Linda E Kelemen, Linda E Kelemen, Qinggang eWang, Irina eDinu, Robert A Vierkant, Ya-Yu eTsai, Julie M Cunningham, Cathy M Phelan, Brooke L Fridley, Ernest eAmankwah, Edwin S Iversen, Andrew eBerchuck, Joellen M Schildkraut, Ellen L Goode, Thomas A. Sellers
Published 2012-03-01

Germline copy number variation and ovarian cancer survival

by Brooke L Fridley, Prabhakar eChalise, Ya-Yu eTsai, Zhifu eSun, Robert A. Vierkant, Melissa C. Larson, Julie M. Cunningham, Edwin S. Iversen, David eFenstermacher, Jill eBarnholtz-Sloan, Yan eAsmann, Harvey A. Risch, Joellen eSchildkraut, Catherine M. Phelan, Rebecca eSutphen, Thomas A. Sellers, Ellen L. Goode
Published 2012-08-01

Risk of ovarian cancer and inherited variants in relapse-associated genes.

by Abraham Peedicayil, Robert A Vierkant, Lynn C Hartmann, Brooke L Fridley, Zachary S Fredericksen, Kristin L White, Elaine A Elliott, Catherine M Phelan, Ya-Yu Tsai, Andrew Berchuck, Edwin S Iversen, Fergus J Couch, Prema Peethamabaran, Melissa C Larson, Kimberly R Kalli, Matthew L Kosel, Vijayalakshmi Shridhar, David N Rider, Mark Liebow, Julie M Cunningham, Joellen M Schildkraut, Thomas A Sellers, Ellen L Goode
Published 2010-01-01

Correction: Colorectal Cancer Linkage on Chromosomes 4q21, 8q13, 12q24, and 15q22

by Mine S. Cicek, Julie M. Cunningham, Brooke L. Fridley, Daniel J. Serie, William R. Bamlet, Brenda Diergaarde, Robert W. Haile, Loic Le Marchand, Theodore G. Krontiris, H. Banfield Younghusband, Steven Gallinger, Polly A. Newcomb, John L. Hopper, Mark A. Jenkins, Graham Casey, Fredrick Schumacher, Zhu Chen, Melissa S. DeRycke, Allyson S. Templeton, Ingrid Winship, Roger C. Green, Jane S. Green, Finlay A. Macrae, Susan Parry, Graeme P. Young, Joanne P. Young, Daniel Buchanan, Duncan C. Thomas, D. Timothy Bishop, Noralane M. Lindor, Stephen N. Thibodeau, John D. Potter, Ellen L. Goode, for the Colon CFR
Published 2012-01-01

Colorectal cancer linkage on chromosomes 4q21, 8q13, 12q24, and 15q22.

by Mine S Cicek, Julie M Cunningham, Brooke L Fridley, Daniel J Serie, William R Bamlet, Brenda Diergaarde, Robert W Haile, Loic Le Marchand, Theodore G Krontiris, H Banfield Younghusband, Steven Gallinger, Polly A Newcomb, John L Hopper, Mark A Jenkins, Graham Casey, Fredrick Schumacher, Zhu Chen, Melissa S DeRycke, Allyson S Templeton, Ingrid Winship, Roger C Green, Jane S Green, Finlay A Macrae, Susan Parry, Graeme P Young, Joanne P Young, Daniel Buchanan, Duncan C Thomas, D Timothy Bishop, Noralane M Lindor, Stephen N Thibodeau, John D Potter, Ellen L Goode, Colon CFR
Published 2012-01-01

Correction: Colorectal Cancer Linkage on Chromosomes 4q21, 8q13, 12q24, and 15q22.

by Mine S. Cicek, Julie M. Cunningham, Brooke L. Fridley, Daniel J. Serie, William R. Bamlet, Brenda Diergaarde, Robert W. Haile, Loic Le Marchand, Theodore G. Krontiris, H. Banfield Younghusband, Steven Gallinger, Polly A. Newcomb, John L. Hopper, Mark A. Jenkins, Graham Casey, Fredrick Schumacher, Zhu Chen, Melissa S. DeRycke, Allyson S. Templeton, Ingrid Winship, Roger C. Green, Jane S. Green, Finlay A. Macrae, Susan Parry, Graeme P. Young, Joanne P. Young, Daniel Buchanan, Duncan C. Thomas, D. Timothy Bishop, Noralane M. Lindor, Stephen N. Thibodeau, John D. Potter, Ellen L. Goode
Published 2012-01-01