Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

by Dobbs Drena, Andorf Carson, Honavar Vasant
Published 2007-08-01

HomPPI: a class of sequence homology based protein-protein interface prediction methods

by Dobbs Drena, Xue Li C, Honavar Vasant
Published 2011-06-01

Predicting RNA-Protein Interactions Using Only Sequence Information

by Muppirala Usha K, Honavar Vasant G, Dobbs Drena
Published 2011-12-01

Glycosylation site prediction using ensembles of Support Vector Machine classifiers

by Silvescu Adrian, Sinapov Jivko, Caragea Cornelia, Dobbs Drena, Honavar Vasant
Published 2007-11-01

Predicting protein-protein interface residues using local surface structural similarity

by Jordan Rafael A, EL-Manzalawy Yasser, Dobbs Drena, Honavar Vasant
Published 2012-03-01

Predicting DNA-binding sites of proteins from amino acid sequence

by Wu Feihong, Terribilini Michael, Yan Changhui, Jernigan Robert L, Dobbs Drena, Honavar Vasant
Published 2006-05-01

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

by Walia Rasna R, Caragea Cornelia, Lewis Benjamin A, Towfic Fadi, Terribilini Michael, El-Manzalawy Yasser, Dobbs Drena, Honavar Vasant
Published 2012-05-01

ZFNGenome: A comprehensive resource for locating zinc finger nuclease target sites in model organisms

by Voytas Daniel F, Zhang Feng, Sander Jeffry D, Kirkpatrick Jessica R, Reyon Deepak, Joung J Keith, Dobbs Drena, Coffman Clark R
Published 2011-01-01

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

by Honavar Vasant, Yan Changhui, Jernigan Robert L, Kloczkowski Andrzej, Sen Taner Z, Ho Kai-Ming, Wang Cai-Zhuang, Ihm Yungok, Cao Haibo, Gu Xun, Dobbs Drena
Published 2004-12-01

Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences

by Goodwin Mathew J, Dahlborg Elizabeth J, Regan Maureen R, Li Xiaohong, Thibodeau-Beganny Stacey, Foley Jonathan E, Maeder Morgan L, Reyon Deepak, Sander Jeffry D, Fu Fengli, Voytas Daniel F, Joung J, Dobbs Drena
Published 2010-11-01