Illuminating an Ecological Blackbox: Using High Throughput Sequencing to Characterize the Plant Virome Across Scales

by François Maclot, Thierry Candresse, Denis Filloux, Denis Filloux, Carolyn M. Malmstrom, Philippe Roumagnac, Philippe Roumagnac, René van der Vlugt, Sébastien Massart
Published 2020-10-01

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools

by Hanna Susi, Denis Filloux, Mikko J. Frilander, Philippe Roumagnac, Anna-Liisa Laine
Published 2019-01-01

Characterization of alfalfa virus F, a new member of the genus Marafivirus.

by Lev G Nemchinov, Sarah François, Phillipe Roumagnac, Mylène Ogliastro, Rosemarie W Hammond, Dimitre S Mollov, Denis Filloux
Published 2018-01-01

Characterisation of the Viral Community Associated with the Alfalfa Weevil (<i>Hypera postica</i>) and Its Host Plant, Alfalfa (<i>Medicago sativa</i>)

by Sarah François, Aymeric Antoine-Lorquin, Maximilien Kulikowski, Marie Frayssinet, Denis Filloux, Emmanuel Fernandez, Philippe Roumagnac, Rémy Froissart, Mylène Ogliastro
Published 2021-04-01

Molecular Viral Diagnosis and Sanitation of Yam Genetic Resources: Implications for Safe Yam Germplasm Exchange

by Marie Umber, Denis Filloux, Suzia Gélabale, Rose-Marie Gomez, Armelle Marais, Séverine Gallet, Franciane Gamiette, Claudie Pavis, Pierre-Yves Teycheney
Published 2020-09-01

Comparison of the Virome of Quarantined Sugarcane Varieties and the Virome of Grasses Growing near the Quarantine Station

by Jean H. Daugrois, Denis Filloux, Charlotte Julian, Lisa Claude, Romain Ferdinand, Emmanuel Fernandez, Hugo Fontes, Philippe C. Rott, Philippe Roumagnac
Published 2021-05-01

Nanopore Sequencing Is a Credible Alternative to Recover Complete Genomes of Geminiviruses

by Selim Ben Chehida, Denis Filloux, Emmanuel Fernandez, Oumaima Moubset, Murielle Hoareau, Charlotte Julian, Laurence Blondin, Jean-Michel Lett, Philippe Roumagnac, Pierre Lefeuvre
Published 2021-04-01

Genetic Diversity of <i>Rice stripe necrosis virus</i> and New Insights into Evolution of the Genus <i>Benyvirus</i>

by Issiaka Bagayoko, Marcos Giovanni Celli, Gustavo Romay, Nils Poulicard, Agnès Pinel-Galzi, Charlotte Julian, Denis Filloux, Philippe Roumagnac, Drissa Sérémé, Claude Bragard, Eugénie Hébrard
Published 2021-04-01

Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context.

by Thierry Candresse, Denis Filloux, Brejnev Muhire, Charlotte Julian, Serge Galzi, Guillaume Fort, Pauline Bernardo, Jean-Heindrich Daugrois, Emmanuel Fernandez, Darren P Martin, Arvind Varsani, Philippe Roumagnac
Published 2014-01-01

A New Prevalent Densovirus Discovered in Acari. Insight from Metagenomics in Viral Communities Associated with Two-Spotted Mite (Tetranychus urticae) Populations

by Sarah François, Doriane Mutuel, Alison B. Duncan, Leonor R. Rodrigues, Celya Danzelle, Sophie Lefevre, Inês Santos, Marie Frayssinet, Emmanuel Fernandez, Denis Filloux, Philippe Roumagnac, Rémy Froissart, Mylène Ogliastro
Published 2019-03-01

Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso.

by Essowè Palanga, Denis Filloux, Darren P Martin, Emmanuel Fernandez, Daniel Gargani, Romain Ferdinand, Jean Zabré, Zakaria Bouda, James Bouma Neya, Mahamadou Sawadogo, Oumar Traore, Michel Peterschmitt, Philippe Roumagnac
Published 2016-01-01

Novel Ampeloviruses Infecting Cassava in Central Africa and the South-West Indian Ocean Islands

by Yves Kwibuka, Espoir Bisimwa, Arnaud G. Blouin, Claude Bragard, Thierry Candresse, Chantal Faure, Denis Filloux, Jean-Michel Lett, François Maclot, Armelle Marais, Santatra Ravelomanantsoa, Sara Shakir, Hervé Vanderschuren, Sébastien Massart
Published 2021-05-01

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion

by Wardatou Boukari, Ricardo I. Alcalá-Briseño, Simona Kraberger, Emmanuel Fernandez, Denis Filloux, Jean-Heinrich Daugrois, Jack C. Comstock, Jean-Michel Lett, Darren P. Martin, Arvind Varsani, Philippe Roumagnac, Jane E. Polston, Philippe C. Rott
Published 2017-07-01

Emergence of Southern Rice Black-Streaked Dwarf Virus in the Centuries-Old Chinese Yuanyang Agrosystem of Rice Landraces

by Pascal Alonso, Pierre Gladieux, Oumaima Moubset, Pei-Jung Shih, Pierre Mournet, Julien Frouin, Laurence Blondin, Romain Ferdinand, Emmanuel Fernandez, Charlotte Julian, Denis Filloux, Henry Adreit, Elisabeth Fournier, Aurélie Ducasse, Vladimir Grosbois, Jean-Benoit Morel, Huichuan Huang, Baihui Jin, Xiahong He, Darren P. Martin, Christian Vernière, Philippe Roumagnac
Published 2019-10-01

The Westward Journey of Alfalfa Leaf Curl Virus

by Zohreh Davoodi, Nicolás Bejerman, Cécile Richet, Denis Filloux, Safaa G. Kumari, Elisavet K. Chatzivassiliou, Serge Galzi, Charlotte Julian, Samira Samarfard, Verónica Trucco, Fabián Giolitti, Elvira Fiallo-Olivé, Jesús Navas-Castillo, Nader Asaad, Abdul Rahman Moukahel, Jomana Hijazi, Samia Mghandef, Jahangir Heydarnejad, Hossein Massumi, Arvind Varsani, Ralf G. Dietzgen, Gordon W. Harkins, Darren P. Martin, Philippe Roumagnac
Published 2018-10-01

A Novel Divergent Geminivirus Identified in Asymptomatic New World Cactaceae Plants

by Rafaela S. Fontenele, Andrew M. Salywon, Lucas C. Majure, Ilaria N. Cobb, Amulya Bhaskara, Jesús A. Avalos-Calleros, Gerardo R. Argüello-Astorga, Kara Schmidlin, Anthony Khalifeh, Kendal Smith, Joshua Schreck, Michael C. Lund, Matias Köhler, Martin F. Wojciechowski, Wendy C. Hodgson, Raul Puente-Martinez, Koenraad Van Doorslaer, Safaa Kumari, Christian Vernière, Denis Filloux, Philippe Roumagnac, Pierre Lefeuvre, Simone G. Ribeiro, Simona Kraberger, Darren P. Martin, Arvind Varsani
Published 2020-04-01

New World Cactaceae Plants Harbor Diverse Geminiviruses

by Rafaela S. Fontenele, Andrew M. Salywon, Lucas C. Majure, Ilaria N. Cobb, Amulya Bhaskara, Jesús A. Avalos-Calleros, Gerardo R. Argüello-Astorga, Kara Schmidlin, Anthony Khalifeh, Kendal Smith, Joshua Schreck, Michael C. Lund, Matias Köhler, Martin F. Wojciechowski, Wendy C. Hodgson, Raul Puente-Martinez, Koenraad Van Doorslaer, Safaa Kumari, Kehinde A. Oyeniran, Christian Vernière, Denis Filloux, Philippe Roumagnac, Pierre Lefeuvre, Simone G. Ribeiro, Simona P. Kraberger, Darren P. Martin, Arvind Varsani
Published 2021-04-01