Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles

by Jean Manguy, Denis C. Shields
Published 2019-10-01

Differences in the number of intrinsically disordered regions between yeast duplicated proteins, and their relationship with functional divergence.

by Floriane Montanari, Denis C Shields, Nora Khaldi
Published 2011-01-01

Peptides derived from cadherin juxtamembrane region inhibit platelet function

by Kalyan Golla, Ilias Stavropoulos, Denis C. Shields, Niamh Moran
Published 2018-01-01

Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity.

by Catherine Mooney, Niall J Haslam, Gianluca Pollastri, Denis C Shields
Published 2012-01-01

Predicting binding within disordered protein regions to structurally characterised peptide-binding domains.

by Waqasuddin Khan, Fergal Duffy, Gianluca Pollastri, Denis C Shields, Catherine Mooney
Published 2013-01-01

SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins.

by Richard J Edwards, Norman E Davey, Norman E Davey, Denis C Shields
Published 2007-10-01

Prediction of polyproline II secondary structure propensity in proteins

by Kevin T. O’Brien, Catherine Mooney, Cyril Lopez, Gianluca Pollastri, Denis C. Shields
Published 2020-01-01

Marked variability in the extent of protein disorder within and between viral families.

by Ravindra Pushker, Catherine Mooney, Norman E Davey, Jean-Marc Jacqué, Denis C Shields
Published 2013-01-01

Protein disorder and short conserved motifs in disordered regions are enriched near the cytoplasmic side of single-pass transmembrane proteins.

by Ilias Stavropoulos, Nora Khaldi, Norman E Davey, Kevin O'Brien, Finian Martin, Denis C Shields
Published 2012-01-01

Discovering anti-platelet drug combinations with an integrated model of activator-inhibitor relationships, activator-activator synergies and inhibitor-inhibitor synergies.

by Federica Lombardi, Kalyan Golla, Darren J Fitzpatrick, Fergal P Casey, Niamh Moran, Denis C Shields
Published 2015-04-01

A polymorphism in is associated with a lower risk for fatal cardiovascular events in females: the MORGAM project

by Ciara Vangjeli, Patrick Dicker, David-Alexandre Tregouet, Denis C Shields, Alun Evans, Alice V Stanton
Published 2011-12-01

SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks [version 1; referees: 2 approved]

by Emily Olorin, Kevin T. O'Brien, Nicolas Palopoli, Åsa Pérez-Bercoff, Denis C. Shields, Richard J. Edwards
Published 2015-08-01

Design and evaluation of antimalarial peptides derived from prediction of short linear motifs in proteins related to erythrocyte invasion.

by Alessandra Bianchin, Angus Bell, Anthony J Chubb, Nathalie Doolan, Darren Leneghan, Ilias Stavropoulos, Denis C Shields, Catherine Mooney
Published 2015-01-01

Computational and experimental analysis of bioactive peptide linear motifs in the integrin adhesome.

by Kevin T O'Brien, Kalyan Golla, Tilen Kranjc, Darragh O'Donovan, Seamus Allen, Patricia Maguire, Jeremy C Simpson, David O'Connell, Niamh Moran, Denis C Shields
Published 2019-01-01

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts

by Tadeusz Krassowski, Aisling Y. Coughlan, Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A. Opulente, Robert Riley, Igor V. Grigoriev, Nikunj Maheshwari, Denis C. Shields, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas, Kenneth H. Wolfe
Published 2018-05-01

Integrating biomarkers across omic platforms: an approach to improve stratification of patients with indolent and aggressive prostate cancer

by Keefe Murphy, Brendan T. Murphy, Susie Boyce, Louise Flynn, Sarah Gilgunn, Colm J. O'Rourke, Cathy Rooney, Henning Stöckmann, Anna L. Walsh, Stephen Finn, Richard J. O'Kennedy, John O'Leary, Stephen R. Pennington, Antoinette S. Perry, Pauline M. Rudd, Radka Saldova, Orla Sheils, Denis C. Shields, R. William Watson
Published 2018-09-01

Genome-wide association study of genetic determinants of LDL-c response to atorvastatin therapy: importance of Lp(a)

by Harshal A. Deshmukh, Helen M. Colhoun, Toby Johnson, Paul M. McKeigue, D. John Betteridge, Paul N. Durrington, John H. Fuller, Shona Livingstone, Valentine Charlton-Menys, Andrew Neil, Neil Poulter, Peter Sever, Denis C. Shields, Alice V. Stanton, Aurobindo Chatterjee, Craig Hyde, Roberto A. Calle, David A. DeMicco, Stella Trompet, Iris Postmus, Ian Ford, J. Wouter Jukema, Mark Caulfield, Graham A. Hitman
Published 2012-05-01

An intrinsically disordered proteins community for ELIXIR [version 1; peer review: 2 approved]

by Norman E. Davey, M. Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella-Gutierrez, Zsuzsanna Dosztanyi, Rachel Drysdale, Richard J. Edwards, Arne Elofsson, Isabella C. Felli, Toby J. Gibson, Aleksandras Gutmanas, John M. Hancock, Jen Harrow, Desmond Higgins, Cy M. Jeffries, Philippe Le Mercier, Balint Mészáros, Marco Necci, Cedric Notredame, Sandra Orchard, Christos A. Ouzounis, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Vasilis J. Promponas, Patrick Ruch, Gabriella Rustici, Pedro Romero, Sirarat Sarntivijai, Gary Saunders, Benjamin Schuler, Malvika Sharan, Denis C. Shields, Joel L. Sussman, Jonathan A. Tedds, Peter Tompa, Michael Turewicz, Jiri Vondrasek, Wim F. Vranken, Bonnie Ann Wallace, Kanin Wichapong, Silvio C. E. Tosatto
Published 2019-10-01