COVID-DeepPredictor: Recurrent Neural Network to Predict SARS-CoV-2 and Other Pathogenic Viruses

by Indrajit Saha, Nimisha Ghosh, Debasree Maity, Arjit Seal, Dariusz Plewczynski, Dariusz Plewczynski
Published 2021-02-01

Application of Machine Learning Method in Genomics and Proteomics

by Hao Lin, Wei Chen, Ramu Anandakrishnan, Dariusz Plewczynski
Published 2015-01-01

ShapeGTB: the role of local DNA shape in prioritization of functional variants in human promoters with machine learning

by Maja Malkowska, Julian Zubek, Dariusz Plewczynski, Lucjan S. Wyrwicz
Published 2018-11-01

Identification of Breast Cancer Subtype Specific MicroRNAs Using Survival Analysis to Find Their Role in Transcriptomic Regulation

by Michał Denkiewicz, Michał Denkiewicz, Michał Denkiewicz, Indrajit Saha, Somnath Rakshit, Somnath Rakshit, Jnanendra Prasad Sarkar, Jnanendra Prasad Sarkar, Dariusz Plewczynski, Dariusz Plewczynski
Published 2019-10-01

Corrigendum: Identification of Breast Cancer Subtype Specific MicroRNAs Using Survival Analysis to Find Their Role in Transcriptomic Regulation

by Michał Denkiewicz, Michał Denkiewicz, Michał Denkiewicz, Indrajit Saha, Somnath Rakshit, Somnath Rakshit, Jnanendra Prasad Sarkar, Jnanendra Prasad Sarkar, Dariusz Plewczynski, Dariusz Plewczynski
Published 2020-02-01

FunPred 3.0: improved protein function prediction using protein interaction network

by Sovan Saha, Piyali Chatterjee, Subhadip Basu, Mita Nasipuri, Dariusz Plewczynski
Published 2019-05-01

Exploring 3D chromatin contacts in gene regulation: The evolution of approaches for the identification of functional enhancer-promoter interaction

by Hang Xu, Shijie Zhang, Xianfu Yi, Dariusz Plewczynski, Mulin Jun Li
Published 2020-01-01

Identification of miRNA Biomarkers for Diverse Cancer Types Using Statistical Learning Methods at the Whole-Genome Scale

by Jnanendra Prasad Sarkar, Jnanendra Prasad Sarkar, Indrajit Saha, Adrian Lancucki, Nimisha Ghosh, Michal Wlasnowolski, Grzegorz Bokota, Grzegorz Bokota, Ashmita Dey, Piotr Lipinski, Dariusz Plewczynski, Dariusz Plewczynski
Published 2020-11-01

Multi-level machine learning prediction of protein–protein interactions in Saccharomyces cerevisiae

by Julian Zubek, Marcin Tatjewski, Adam Boniecki, Maciej Mnich, Subhadip Basu, Dariusz Plewczynski
Published 2015-07-01

Social adaptation in multi-agent model of linguistic categorization is affected by network information flow.

by Julian Zubek, Michał Denkiewicz, Juliusz Barański, Przemysław Wróblewski, Joanna Rączaszek-Leonardi, Dariusz Plewczynski
Published 2017-01-01

Spatial chromatin architecture alteration by structural variations in human genomes at the population scale

by Michal Sadowski, Agnieszka Kraft, Przemyslaw Szalaj, Michal Wlasnowolski, Zhonghui Tang, Yijun Ruan, Dariusz Plewczynski
Published 2019-07-01

Correction to: Spatial chromatin architecture alteration by structural variations in human genomes at the population scale

by Michal Sadowski, Agnieszka Kraft, Przemyslaw Szalaj, Michal Wlasnowolski, Zhonghui Tang, Yijun Ruan, Dariusz Plewczynski
Published 2019-09-01

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

by Grzegorz Bokota, Jacek Sroka, Subhadip Basu, Nirmal Das, Pawel Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Adriana Magalska, Dariusz Plewczynski
Published 2021-02-01

Species used for drug testing reveal different inhibition susceptibility for 17beta-hydroxysteroid dehydrogenase type 1.

by Gabriele Möller, Bettina Husen, Dorota Kowalik, Leena Hirvelä, Dariusz Plewczynski, Leszek Rychlewski, Josef Messinger, Hubert Thole, Jerzy Adamski
Published 2010-01-01

Three-Dimensional Segmentation and Reconstruction of Neuronal Nuclei in Confocal Microscopic Images

by Błażej Ruszczycki, Katarzyna Karolina Pels, Agnieszka Walczak, Katarzyna Zamłyńska, Michał Such, Michał Such, Andrzej Antoni Szczepankiewicz, Małgorzata Hanna Hall, Małgorzata Hanna Hall, Adriana Magalska, Marta Magnowska, Artur Wolny, Grzegorz Bokota, Subhadip Basu, Ayan Pal, Dariusz Plewczynski, Dariusz Plewczynski, Grzegorz Marek Wilczyński
Published 2019-08-01

TBC1D24 emerges as an important contributor to progressive postlingual dominant hearing loss

by Dominika Oziębło, Marcin L. Leja, Michal Lazniewski, Anna Sarosiak, Grażyna Tacikowska, Krzysztof Kochanek, Dariusz Plewczynski, Henryk Skarżyński, Monika Ołdak
Published 2021-05-01

FIREcaller: Detecting frequently interacting regions from Hi-C data

by Cheynna Crowley, Yuchen Yang, Yunjiang Qiu, Benxia Hu, Armen Abnousi, Jakub Lipiński, Dariusz Plewczyński, Di Wu, Hyejung Won, Bing Ren, Ming Hu, Yun Li
Published 2021-01-01

Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia

by Ping Wang, Zhonghui Tang, Byoungkoo Lee, Jacqueline Jufen Zhu, Liuyang Cai, Przemyslaw Szalaj, Simon Zhongyuan Tian, Meizhen Zheng, Dariusz Plewczynski, Xiaoan Ruan, Edison T. Liu, Chia-Lin Wei, Yijun Ruan
Published 2020-05-01

Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization

by Paweł Trzaskoma, Błażej Ruszczycki, Byoungkoo Lee, Katarzyna K. Pels, Katarzyna Krawczyk, Grzegorz Bokota, Andrzej A. Szczepankiewicz, Jesse Aaron, Agnieszka Walczak, Małgorzata A. Śliwińska, Adriana Magalska, Michal Kadlof, Artur Wolny, Zofia Parteka, Sebastian Arabasz, Magdalena Kiss-Arabasz, Dariusz Plewczyński, Yijun Ruan, Grzegorz M. Wilczyński
Published 2020-05-01