Advancing functional and translational microbiome research using meta-omics approaches

by Xu Zhang, Leyuan Li, James Butcher, Alain Stintzi, Daniel Figeys
Published 2019-12-01

Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus

by Paula Adler, Paula Adler, Paula Adler, Cheng-Kang Chiang, Cheng-Kang Chiang, Cheng-Kang Chiang, Janice Mayne, Janice Mayne, Janice Mayne, Zhibin Ning, Zhibin Ning, Zhibin Ning, Xu Zhang, Xu Zhang, Xu Zhang, Bo Xu, Bo Xu, Bo Xu, Hai-Ying Mary Cheng, Hai-Ying Mary Cheng, Daniel Figeys, Daniel Figeys, Daniel Figeys, Daniel Figeys
Published 2020-01-01

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

by Leyuan Li, Zhibin Ning, Xu Zhang, Janice Mayne, Kai Cheng, Alain Stintzi, Daniel Figeys
Published 2020-03-01

MetaLab: an automated pipeline for metaproteomic data analysis

by Kai Cheng, Zhibin Ning, Xu Zhang, Leyuan Li, Bo Liao, Janice Mayne, Alain Stintzi, Daniel Figeys
Published 2017-12-01

Time-of-day- and light-dependent expression of ubiquitin protein ligase E3 component N-recognin 4 (UBR4) in the suprachiasmatic nucleus circadian clock.

by Harrod H Ling, Christian Beaulé, Cheng-Kang Chiang, Ruijun Tian, Daniel Figeys, Hai-Ying M Cheng
Published 2014-01-01

A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches

by Leyuan Li, James Ryan, Zhibin Ning, Xu Zhang, Janice Mayne, Mathieu Lavallée-Adam, Alain Stintzi, Daniel Figeys
Published 2020-01-01

MFG-E8 Is Critical for Embryonic Stem Cell-Mediated T Cell Immunomodulation

by Yuan Tan, Bodour AlKhamees, Deyong Jia, Li Li, Jean-François Couture, Daniel Figeys, Masahisa Jinushi, Lisheng Wang
Published 2015-11-01

Regulation of septin dynamics by the Saccharomyces cerevisiae lysine acetyltransferase NuA4.

by Leslie Mitchell, Andrea Lau, Jean-Philippe Lambert, Hu Zhou, Ying Fong, Jean-François Couture, Daniel Figeys, Kristin Baetz
Published 2011-01-01

Predicting Glycerophosphoinositol Identities in Lipidomic Datasets Using VaLID (Visualization and Phospholipid Identification)—An Online Bioinformatic Search Engine

by Graeme S. V. McDowell, Alexandre P. Blanchard, Graeme P. Taylor, Daniel Figeys, Stephen Fai, Steffany A. L. Bennett
Published 2014-01-01

Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes

by Leyuan Li, Lu Chang, Xu Zhang, Zhibin Ning, Janice Mayne, Yang Ye, Alain Stintzi, Jia Liu, Daniel Figeys
Published 2020-09-01

Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL^®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach

by Janice Mayne, Xu Zhang, James Butcher, Krystal Walker, Zhibin Ning, Ewelina Wójcik, Jarosław Dastych, Alain Stintzi, Daniel Figeys
Published 2021-08-01

An in vitro model maintaining taxon-specific functional activities of the gut microbiome

by Leyuan Li, Elias Abou-Samra, Zhibin Ning, Xu Zhang, Janice Mayne, Janet Wang, Kai Cheng, Krystal Walker, Alain Stintzi, Daniel Figeys
Published 2019-09-01

Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics

by Yulin Wang, Qigui Niu, Xu Zhang, Lei Liu, Yubo Wang, Yiqiang Chen, Mishty Negi, Daniel Figeys, Yu-You Li, Tong Zhang
Published 2019-08-01

The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes.

by Cheng-Kang Chiang, Neel Mehta, Abhilasha Patel, Peng Zhang, Zhibin Ning, Janice Mayne, Warren Y L Sun, Hai-Ying M Cheng, Daniel Figeys
Published 2014-10-01

Srf1 is a novel regulator of phospholipase D activity and is essential to buffer the toxic effects of C16:0 platelet activating factor.

by Michael A Kennedy, Nazir Kabbani, Jean-Philippe Lambert, Leigh Anne Swayne, Fida Ahmed, Daniel Figeys, Steffany A L Bennett, Jennnifer Bryan, Kristin Baetz
Published 2011-02-01

PINK1-mediated phosphorylation of LETM1 regulates mitochondrial calcium transport and protects neurons against mitochondrial stress

by En Huang, Dianbo Qu, Tianwen Huang, Nicoletta Rizzi, Wassamon Boonying, Dorothy Krolak, Paolo Ciana, John Woulfe, Christine Klein, Ruth S. Slack, Daniel Figeys, David S. Park
Published 2017-11-01

GRK2 Fine-Tunes Circadian Clock Speed and Entrainment via Transcriptional and Post-translational Control of PERIOD Proteins

by Neel Mehta, Arthur H. Cheng, Cheng-Kang Chiang, Lucia Mendoza-Viveros, Harrod H. Ling, Abhilasha Patel, Bo Xu, Daniel Figeys, Hai-Ying M. Cheng
Published 2015-08-01

Retraction Note to: Differential regulation of wild-type and mutant alpha-synuclein binding to synaptic membranes by cytosolic factors

by Sabine Wislet-Gendebien, Naomi P. Visanji, Shawn N. Whitehead, Diana Marsilio, Weimin Hou, Daniel Figeys, Paul E. Fraser, Steffany A. L. Bennett, Anurag Tandon
Published 2021-06-01

Functional analysis of the missense APOC3 mutation Ala23Thr associated with human hypotriglyceridemia

by Meenakshi Sundaram, Shumei Zhong, Maroun Bou Khalil, Hu Zhou, Zhenghui G. Jiang, Yang Zhao, Jahangir Iqbal, M. Mahmood Hussain, Daniel Figeys, Yuwei Wang, Zemin Yao
Published 2010-06-01

Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease

by Xu Zhang, Zhibin Ning, Janice Mayne, Yidai Yang, Shelley A. Deeke, Krystal Walker, Charles L. Farnsworth, Matthew P. Stokes, Jean-François Couture, David Mack, Alain Stintzi, Daniel Figeys
Published 2020-08-01