Integrating quantitative knowledge into a qualitative gene regulatory network.

by Jérémie Bourdon, Damien Eveillard, Anne Siegel
Published 2011-09-01

Probabilistic Modeling of Microbial Metabolic Networks for Integrating Partial Quantitative Knowledge Within the Nitrogen Cycle

by Damien Eveillard, Damien Eveillard, Nicholas J. Bouskill, Damien Vintache, Damien Vintache, Julien Gras, Bess B. Ward, Jérémie Bourdon
Published 2019-01-01

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.

by Marko Budinich, Jérémie Bourdon, Abdelhalim Larhlimi, Damien Eveillard
Published 2017-01-01

On the Power of Uncertainties in Microbial System Modeling: No Need To Hide Them Anymore

by Benoit Delahaye, Damien Eveillard, Nicholas Bouskill, Nicholas Chia
Published 2017-12-01

Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses

by François Thomas, Philippe Bordron, Philippe Bordron, Philippe Bordron, Damien Eveillard, Gurvan Michel
Published 2017-09-01

Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic

by Seaver Wang, Weiyi Tang, Erwan Delage, Scott Gifford, Hannah Whitby, Aridane G. González, Damien Eveillard, Hélène Planquette, Nicolas Cassar
Published 2021-03-01

Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks

by Julie Laniau, Clémence Frioux, Jacques Nicolas, Caroline Baroukh, Maria-Paz Cortes, Jeanne Got, Camille Trottier, Damien Eveillard, Anne Siegel
Published 2017-10-01

Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula

by Yajuan Lin, Carly Moreno, Adrian Marchetti, Hugh Ducklow, Oscar Schofield, Erwan Delage, Michael Meredith, Zuchuan Li, Damien Eveillard, Samuel Chaffron, Nicolas Cassar
Published 2021-08-01

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.

by Sylvain Prigent, Clémence Frioux, Simon M Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel
Published 2017-01-01

Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria

by Hugo Doré, Gregory K. Farrant, Ulysse Guyet, Julie Haguait, Florian Humily, Morgane Ratin, Frances D. Pitt, Martin Ostrowski, Christophe Six, Loraine Brillet-Guéguen, Loraine Brillet-Guéguen, Mark Hoebeke, Antoine Bisch, Gildas Le Corguillé, Erwan Corre, Karine Labadie, Jean-Marc Aury, Patrick Wincker, Dong Han Choi, Dong Han Choi, Jae Hoon Noh, Jae Hoon Noh, Damien Eveillard, Damien Eveillard, David J. Scanlan, Frédéric Partensky, Laurence Garczarek, Laurence Garczarek
Published 2020-09-01

Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area

by Clarisse Lemonnier, Clarisse Lemonnier, Morgan Perennou, Damien Eveillard, Antonio Fernandez-Guerra, Antonio Fernandez-Guerra, Antonio Fernandez-Guerra, Aude Leynaert, Louis Marié, Hilary G. Morrison, Laurent Memery, Christine Paillard, Lois Maignien, Lois Maignien
Published 2020-06-01

Uncovering the Core Microbiome and Distribution of Palmerolide in <i>Synoicum adareanum</i> Across the Anvers Island Archipelago<i>, </i>Antarctica

by Alison E. Murray, Nicole E. Avalon, Lucas Bishop, Karen W. Davenport, Erwan Delage, Armand E.K. Dichosa, Damien Eveillard, Mary L. Higham, Sofia Kokkaliari, Chien-Chi Lo, Christian S. Riesenfeld, Ryan M. Young, Patrick S.G. Chain, Bill J. Baker
Published 2020-06-01

Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803

by Ulysse Guyet, Ngoc A. Nguyen, Hugo Doré, Julie Haguait, Justine Pittera, Maël Conan, Morgane Ratin, Erwan Corre, Gildas Le Corguillé, Loraine Brillet-Guéguen, Loraine Brillet-Guéguen, Mark Hoebeke, Christophe Six, Claudia Steglich, Anne Siegel, Damien Eveillard, Frédéric Partensky, Laurence Garczarek
Published 2020-07-01

Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems

by Antonietta Capotondi, Antonietta Capotondi, Michael Jacox, Michael Jacox, Michael Jacox, Chris Bowler, Chris Bowler, Maria Kavanaugh, Patrick Lehodey, Daniel Barrie, Stephanie Brodie, Stephanie Brodie, Samuel Chaffron, Samuel Chaffron, Wei Cheng, Wei Cheng, Daniela F. Dias, Damien Eveillard, Damien Eveillard, Lionel Guidi, Lionel Guidi, Daniele Iudicone, Nicole S. Lovenduski, Janet A. Nye, Ivonne Ortiz, Douglas Pirhalla, Mercedes Pozo Buil, Mercedes Pozo Buil, Vincent Saba, Scott Sheridan, Samantha Siedlecki, Aneesh Subramanian, Colomban de Vargas, Colomban de Vargas, Emanuele Di Lorenzo, Scott C. Doney, Albert J. Hermann, Albert J. Hermann, Terrence Joyce, Mark Merrifield, Arthur J. Miller, Fabrice Not, Fabrice Not, Stephane Pesant
Published 2019-10-01

A community perspective on the concept of marine holobionts: current status, challenges, and future directions

by Simon M. Dittami, Enrique Arboleda, Jean-Christophe Auguet, Arite Bigalke, Enora Briand, Paco Cárdenas, Ulisse Cardini, Johan Decelle, Aschwin H. Engelen, Damien Eveillard, Claire M.M. Gachon, Sarah M. Griffiths, Tilmann Harder, Ehsan Kayal, Elena Kazamia, François H. Lallier, Mónica Medina, Ezequiel M. Marzinelli, Teresa Maria Morganti, Laura Núñez Pons, Soizic Prado, José Pintado, Mahasweta Saha, Marc-André Selosse, Derek Skillings, Willem Stock, Shinichi Sunagawa, Eve Toulza, Alexey Vorobev, Catherine Leblanc, Fabrice Not
Published 2021-02-01