Elucidation of complexity and prediction of interactions in microbial communities

by Cristal Zuñiga, Livia Zaramela, Karsten Zengler
Published 2017-11-01

Advances in metabolic modeling of oleaginous microalgae

by Juan D. Tibocha-Bonilla, Cristal Zuñiga, Rubén D. Godoy-Silva, Karsten Zengler
Published 2018-09-01

Improving saliva shotgun metagenomics by chemical host DNA depletion

by Clarisse A. Marotz, Jon G. Sanders, Cristal Zuniga, Livia S. Zaramela, Rob Knight, Karsten Zengler
Published 2018-02-01

A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.

by Yara Seif, Jonathan M Monk, Nathan Mih, Hannah Tsunemoto, Saugat Poudel, Cristal Zuniga, Jared Broddrick, Karsten Zengler, Bernhard O Palsson
Published 2019-01-01

Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph Azotobacter vinelandii DJ

by Diego Tec Campos, Cristal Zuñiga, Anurag Passi, John Del Toro, Juan D. Tibocha-Bonilla, Alejandro Zepeda, Michael J. Betenbaugh, Karsten Zengler
Published 2020-12-01

Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth

by Cristal Zuñiga, Tingting Li, Michael T. Guarnieri, Jackson P. Jenkins, Chien-Ting Li, Kerem Bingol, Young-Mo Kim, Michael J. Betenbaugh, Karsten Zengler
Published 2020-07-01

Optimization of carbon and energy utilization through differential translational efficiency

by Mahmoud M. Al-Bassam, Ji-Nu Kim, Livia S. Zaramela, Benjamin P. Kellman, Cristal Zuniga, Jacob M. Wozniak, David J. Gonzalez, Karsten Zengler
Published 2018-10-01

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

by Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W Rose
Published 2019-07-01