A knowledge based approach to matching human neurodegenerative disease and animal models

by Maryann E Martone, Sarah Markels Maynard, Christopher J Mungall, Suzanna E Lewis, Fahim T. Imam
Published 2013-05-01

Linking human diseases to animal models using ontology-based phenotype annotation.

by Nicole L Washington, Melissa A Haendel, Christopher J Mungall, Michael Ashburner, Monte Westerfield, Suzanna E Lewis
Published 2009-11-01

ROBOT: A Tool for Automating Ontology Workflows

by Rebecca C. Jackson, James P. Balhoff, Eric Douglass, Nomi L. Harris, Christopher J. Mungall, James A. Overton
Published 2019-07-01

On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.

by Paul D Thomas, Valerie Wood, Christopher J Mungall, Suzanna E Lewis, Judith A Blake, Gene Ontology Consortium
Published 2012-01-01

The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species

by Ramona L. Walls, Laurel Cooper, Justin Elser, Maria Alejandra Gandolfo, Christopher J. Mungall, Barry Smith, Dennis W. Stevenson, Pankaj Jaiswal
Published 2019-06-01

Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge.

by Lance M Hannestad, Vlado Dančík, Meera Godden, Imelda W Suen, Kenneth C Huellas-Bruskiewicz, Benjamin M Good, Christopher J Mungall, Richard M Bruskiewich
Published 2021-01-01

Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research [v2; ref status: indexed, http://f1000r.es/2td]

by Sebastian Köhler, Sandra C Doelken, Barbara J Ruef, Sebastian Bauer, Nicole Washington, Monte Westerfield, George Gkoutos, Paul Schofield, Damian Smedley, Suzanna E Lewis, Peter N Robinson, Christopher J Mungall
Published 2014-01-01

Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research [v1; ref status: indexed, http://f1000r.es/p5]

by Sebastian Köhler, Sandra C Doelken, Barbara J Ruef, Sebastian Bauer, Nicole Washington, Monte Westerfield, George Gkoutos, Paul Schofield, Damian Smedley, Suzanna E Lewis, Peter N Robinson, Christopher J Mungall
Published 2013-02-01

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebraf...

by Sandra C. Doelken, Sebastian Köhler, Christopher J. Mungall, Georgios V. Gkoutos, Barbara J. Ruef, Cynthia Smith, Damian Smedley, Sebastian Bauer, Eva Klopocki, Paul N. Schofield, Monte Westerfield, Peter N. Robinson, Suzanna E. Lewis
Published 2013-03-01

Transforming the study of organisms: Phenomic data models and knowledge bases.

by Anne E Thessen, Ramona L Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Buttigieg, James P Balhoff, Christopher J Mungall, Deborah L McGuinness, Brian J Stucky, Matthew J Yoder, Melissa A Haendel
Published 2020-11-01

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns

by Valerie Wood, Seth Carbon, Midori A. Harris, Antonia Lock, Stacia R. Engel, David P. Hill, Kimberly Van Auken, Helen Attrill, Marc Feuermann, Pascale Gaudet, Ruth C. Lovering, Sylvain Poux, Kim M. Rutherford, Christopher J. Mungall
Published 2020-09-01

A unified anatomy ontology of the vertebrate skeletal system.

by Wasila M Dahdul, James P Balhoff, David C Blackburn, Alexander D Diehl, Melissa A Haendel, Brian K Hall, Hilmar Lapp, John G Lundberg, Christopher J Mungall, Martin Ringwald, Erik Segerdell, Ceri E Van Slyke, Matthew K Vickaryous, Monte Westerfield, Paula M Mabee
Published 2012-01-01

Representing kidney development using the gene ontology.

by Yasmin Alam-Faruque, David P Hill, Emily C Dimmer, Midori A Harris, Rebecca E Foulger, Susan Tweedie, Helen Attrill, Douglas G Howe, Stephen Randall Thomas, Duncan Davidson, Adrian S Woolf, Judith A Blake, Christopher J Mungall, Claire O'Donovan, Rolf Apweiler, Rachael P Huntley
Published 2014-01-01

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

by Justin T. Reese, Deepak Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
Published 2021-01-01

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.

by Robert E Druzinsky, James P Balhoff, Alfred W Crompton, James Done, Rebecca Z German, Melissa A Haendel, Anthony Herrel, Susan W Herring, Hilmar Lapp, Paula M Mabee, Hans-Michael Muller, Christopher J Mungall, Paul W Sternberg, Kimberly Van Auken, Christopher J Vinyard, Susan H Williams, Christine E Wall
Published 2016-01-01

Emerging semantics to link phenotype and environment

by Anne E. Thessen, Daniel E. Bunker, Pier Luigi Buttigieg, Laurel D. Cooper, Wasila M. Dahdul, Sami Domisch, Nico M. Franz, Pankaj Jaiswal, Carolyn J. Lawrence-Dill, Peter E. Midford, Christopher J. Mungall, Martín J. Ramírez, Chelsea D. Specht, Lars Vogt, Rutger Aldo Vos, Ramona L. Walls, Jeffrey W. White, Guanyang Zhang, Andrew R. Deans, Eva Huala, Suzanna E. Lewis, Paula M. Mabee
Published 2015-12-01

The health care and life sciences community profile for dataset descriptions

by Michel Dumontier, Alasdair J.G. Gray, M. Scott Marshall, Vladimir Alexiev, Peter Ansell, Gary Bader, Joachim Baran, Jerven T. Bolleman, Alison Callahan, José Cruz-Toledo, Pascale Gaudet, Erich A. Gombocz, Alejandra N. Gonzalez-Beltran, Paul Groth, Melissa Haendel, Maori Ito, Simon Jupp, Nick Juty, Toshiaki Katayama, Norio Kobayashi, Kalpana Krishnaswami, Camille Laibe, Nicolas Le Novère, Simon Lin, James Malone, Michael Miller, Christopher J. Mungall, Laurens Rietveld, Sarala M. Wimalaratne, Atsuko Yamaguchi
Published 2016-08-01

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

by Elizabeth Arnaud, Marie-Angélique Laporte, Soonho Kim, Céline Aubert, Sabina Leonelli, Berta Miro, Laurel Cooper, Pankaj Jaiswal, Gideon Kruseman, Rosemary Shrestha, Pier Luigi Buttigieg, Christopher J. Mungall, Julian Pietragalla, Afolabi Agbona, Jacqueline Muliro, Jeffrey Detras, Vilma Hualla, Abhishek Rathore, Roma Rani Das, Ibnou Dieng, Guillaume Bauchet, Naama Menda, Cyril Pommier, Felix Shaw, David Lyon, Leroy Mwanzia, Henry Juarez, Enrico Bonaiuti, Brian Chiputwa, Olatunbosun Obileye, Sandrine Auzoux, Esther Dzalé Yeumo, Lukas A. Mueller, Kevin Silverstein, Alexandra Lafargue, Erick Antezana, Medha Devare, Brian King
Published 2020-10-01

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

by Julie A McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal K Fellows, Alejandra Gonzalez-Beltran, Philipp Gormanns, Jeffrey Grethe, Janna Hastings, Jean-Karim Hériché, Henning Hermjakob, Jon C Ison, Rafael C Jimenez, Simon Jupp, John Kunze, Camille Laibe, Nicolas Le Novère, James Malone, Maria Jesus Martin, Johanna R McEntyre, Chris Morris, Juha Muilu, Wolfgang Müller, Philippe Rocca-Serra, Susanna-Assunta Sansone, Murat Sariyar, Jacky L Snoep, Stian Soiland-Reyes, Natalie J Stanford, Neil Swainston, Nicole Washington, Alan R Williams, Sarala M Wimalaratne, Lilly M Winfree, Katherine Wolstencroft, Carole Goble, Christopher J Mungall, Melissa A Haendel, Helen Parkinson
Published 2017-06-01

Finding our way through phenotypes.

by Andrew R Deans, Suzanna E Lewis, Eva Huala, Salvatore S Anzaldo, Michael Ashburner, James P Balhoff, David C Blackburn, Judith A Blake, J Gordon Burleigh, Bruno Chanet, Laurel D Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Wasila Dahdul, Sandip Das, T Alexander Dececchi, Agnes Dettai, Rui Diogo, Robert E Druzinsky, Michel Dumontier, Nico M Franz, Frank Friedrich, George V Gkoutos, Melissa Haendel, Luke J Harmon, Terry F Hayamizu, Yongqun He, Heather M Hines, Nizar Ibrahim, Laura M Jackson, Pankaj Jaiswal, Christina James-Zorn, Sebastian Köhler, Guillaume Lecointre, Hilmar Lapp, Carolyn J Lawrence, Nicolas Le Novère, John G Lundberg, James Macklin, Austin R Mast, Peter E Midford, István Mikó, Christopher J Mungall, Anika Oellrich, David Osumi-Sutherland, Helen Parkinson, Martín J Ramírez, Stefan Richter, Peter N Robinson, Alan Ruttenberg, Katja S Schulz, Erik Segerdell, Katja C Seltmann, Michael J Sharkey, Aaron D Smith, Barry Smith, Chelsea D Specht, R Burke Squires, Robert W Thacker, Anne Thessen, Jose Fernandez-Triana, Mauno Vihinen, Peter D Vize, Lars Vogt, Christine E Wall, Ramona L Walls, Monte Westerfeld, Robert A Wharton, Christian S Wirkner, James B Woolley, Matthew J Yoder, Aaron M Zorn, Paula Mabee
Published 2015-01-01