A factor graph nested effects model to identify networks from genetic perturbations.

by Charles J Vaske, Carrie House, Truong Luu, Bryan Frank, Chen-Hsiang Yeang, Norman H Lee, Joshua M Stuart
Published 2009-01-01

A deep learning image-based intrinsic molecular subtype classifier of breast tumors reveals tumor heterogeneity that may affect survival

by Mustafa I. Jaber, Bing Song, Clive Taylor, Charles J. Vaske, Stephen C. Benz, Shahrooz Rabizadeh, Patrick Soon-Shiong, Christopher W. Szeto
Published 2020-01-01

Identification and validation of expressed HLA-binding breast cancer neoepitopes for potential use in individualized cancer therapy

by James L Gulley, Andrew Nguyen, Shahrooz Rabizadeh, Kayvan Niazi, Duane H Hamilton, Marieke Griffioen, Stephen C Benz, Patricia Spilman, Peter A Fasching, Matthias W Beckmann, Matthias Ruebner, J Zachary Sanborn, Charles J Vaske, Karin L Lee, Anita N. Kremer
Published 2021-06-01

Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma

by Jeffrey P. North, Justin Golovato, Charles J. Vaske, J. Zachary Sanborn, Andrew Nguyen, Wei Wu, Benjamin Goode, Meredith Stevers, Kevin McMullen, Bethany E. Perez White, Eric A. Collisson, Michele Bloomer, David A. Solomon, Stephen C. Benz, Raymond J. Cho
Published 2018-05-01

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution

by Jeffrey B. Cheng, Andrew J. Sedgewick, Alex I. Finnegan, Paymann Harirchian, Jerry Lee, Sunjong Kwon, Marlys S. Fassett, Justin Golovato, Matthew Gray, Ruby Ghadially, Wilson Liao, Bethany E. Perez White, Theodora M. Mauro, Thaddeus Mully, Esther A. Kim, Hani Sbitany, Isaac M. Neuhaus, Roy C. Grekin, Siegrid S. Yu, Joe W. Gray, Elizabeth Purdom, Ralf Paus, Charles J. Vaske, Stephen C. Benz, Jun S. Song, Raymond J. Cho
Published 2018-10-01

Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome

by Miriam Ragle Aure, Valeria Vitelli, Sandra Jernström, Surendra Kumar, Marit Krohn, Eldri U. Due, Tonje Husby Haukaas, Suvi-Katri Leivonen, Hans Kristian Moen Vollan, Torben Lüders, Einar Rødland, Charles J. Vaske, Wei Zhao, Elen K. Møller, Silje Nord, Guro F. Giskeødegård, Tone Frost Bathen, Carlos Caldas, Trine Tramm, Jan Alsner, Jens Overgaard, Jürgen Geisler, Ida R. K. Bukholm, Bjørn Naume, Ellen Schlichting, Torill Sauer, Gordon B. Mills, Rolf Kåresen, Gunhild M. Mælandsmo, Ole Christian Lingjærde, Arnoldo Frigessi, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Kristine K. Sahlberg, OSBREAC
Published 2017-03-01