Computational Verification of Large Logical Models—Application to the Prediction of T Cell Response to Checkpoint Inhibitors

by Céline Hernandez, Morgane Thomas-Chollier, Morgane Thomas-Chollier, Aurélien Naldi, Denis Thieffry
Published 2020-09-01

A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor.

by Ivo Fierro-Monti, Julien Racle, Celine Hernandez, Patrice Waridel, Vassily Hatzimanikatis, Manfredo Quadroni
Published 2013-01-01

Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy.

by Ivo Fierro-Monti, Pablo Echeverria, Julien Racle, Celine Hernandez, Didier Picard, Manfredo Quadroni
Published 2013-01-01

Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0

by Aurélien Naldi, Céline Hernandez, Wassim Abou-Jaoudé, Pedro T. Monteiro, Claudine Chaouiya, Denis Thieffry
Published 2018-06-01

Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer

by Laura Cantini, Pooya Zakeri, Celine Hernandez, Aurelien Naldi, Denis Thieffry, Elisabeth Remy, Anaïs Baudot
Published 2021-01-01

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.

by Elodie Thierion, Johan Le Men, Samuel Collombet, Céline Hernandez, Fanny Coulpier, Patrick Torbey, Morgane Thomas-Chollier, Daan Noordermeer, Patrick Charnay, Pascale Gilardi-Hebenstreit
Published 2017-07-01

Contribution of ROS and metabolic status to neonatal and adult CD8+ T cell activation.

by José Antonio Sánchez-Villanueva, Otoniel Rodríguez-Jorge, Oscar Ramírez-Pliego, Gabriela Rosas Salgado, Wassim Abou-Jaoudé, Céline Hernandez, Aurélien Naldi, Denis Thieffry, María Angélica Santana
Published 2019-01-01

Hepatitis C virus (HCV) evades NKG2D-dependent NK cell responses through NS5A-mediated imbalance of inflammatory cytokines.

by Damien Sène, Franck Levasseur, Michal Abel, Marion Lambert, Xavier Camous, Céline Hernandez, Véronique Pène, Arielle R Rosenberg, Evelyne Jouvin-Marche, Patrice N Marche, Patrice Cacoub, Sophie Caillat-Zucman
Published 2010-11-01

Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

by Nicolas Levy, Nicolas Levy, Aurélien Naldi, Céline Hernandez, Gautier Stoll, Gautier Stoll, Gautier Stoll, Gautier Stoll, Gautier Stoll, Denis Thieffry, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev, Laurence Calzone, Laurence Calzone, Laurence Calzone, Loïc Paulevé
Published 2018-07-01

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

by Aurélien Naldi, Céline Hernandez, Nicolas Levy, Nicolas Levy, Gautier Stoll, Gautier Stoll, Gautier Stoll, Gautier Stoll, Gautier Stoll, Pedro T. Monteiro, Claudine Chaouiya, Tomáš Helikar, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev, Laurence Calzone, Laurence Calzone, Laurence Calzone, Sarah Cohen-Boulakia, Denis Thieffry, Loïc Paulevé
Published 2018-06-01